173 related articles for article (PubMed ID: 36376909)
1. MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution.
Kaufmann TL; Petkovic M; Watkins TBK; Colliver EC; Laskina S; Thapa N; Minussi DC; Navin N; Swanton C; Van Loo P; Haase K; Tarabichi M; Schwarz RF
Genome Biol; 2022 Nov; 23(1):241. PubMed ID: 36376909
[TBL] [Abstract][Full Text] [Related]
2. Tracking the Evolution of Non-Small-Cell Lung Cancer.
Jamal-Hanjani M; Wilson GA; McGranahan N; Birkbak NJ; Watkins TBK; Veeriah S; Shafi S; Johnson DH; Mitter R; Rosenthal R; Salm M; Horswell S; Escudero M; Matthews N; Rowan A; Chambers T; Moore DA; Turajlic S; Xu H; Lee SM; Forster MD; Ahmad T; Hiley CT; Abbosh C; Falzon M; Borg E; Marafioti T; Lawrence D; Hayward M; Kolvekar S; Panagiotopoulos N; Janes SM; Thakrar R; Ahmed A; Blackhall F; Summers Y; Shah R; Joseph L; Quinn AM; Crosbie PA; Naidu B; Middleton G; Langman G; Trotter S; Nicolson M; Remmen H; Kerr K; Chetty M; Gomersall L; Fennell DA; Nakas A; Rathinam S; Anand G; Khan S; Russell P; Ezhil V; Ismail B; Irvin-Sellers M; Prakash V; Lester JF; Kornaszewska M; Attanoos R; Adams H; Davies H; Dentro S; Taniere P; O'Sullivan B; Lowe HL; Hartley JA; Iles N; Bell H; Ngai Y; Shaw JA; Herrero J; Szallasi Z; Schwarz RF; Stewart A; Quezada SA; Le Quesne J; Van Loo P; Dive C; Hackshaw A; Swanton C;
N Engl J Med; 2017 Jun; 376(22):2109-2121. PubMed ID: 28445112
[TBL] [Abstract][Full Text] [Related]
3. CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data.
Yu Z; Li A; Wang M
BMC Bioinformatics; 2016 Aug; 17():310. PubMed ID: 27538789
[TBL] [Abstract][Full Text] [Related]
4. Phylogenetic Reconstruction for Copy-Number Evolution Problems.
Xia R; Lin Y; Zhou J; Geng T; Feng B; Tang J
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(2):694-699. PubMed ID: 29993694
[TBL] [Abstract][Full Text] [Related]
5. Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing.
Jiang Y; Qiu Y; Minn AJ; Zhang NR
Proc Natl Acad Sci U S A; 2016 Sep; 113(37):E5528-37. PubMed ID: 27573852
[TBL] [Abstract][Full Text] [Related]
6. SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances.
Hui S; Nielsen R
BMC Bioinformatics; 2022 Aug; 23(1):348. PubMed ID: 35986254
[TBL] [Abstract][Full Text] [Related]
7. CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data.
Yu Z; Li A; Wang M
BMC Med Genomics; 2017 Mar; 10(1):15. PubMed ID: 28298214
[TBL] [Abstract][Full Text] [Related]
8. Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.
Zaccaria S; El-Kebir M; Klau GW; Raphael BJ
J Comput Biol; 2018 Jul; 25(7):689-708. PubMed ID: 29658782
[TBL] [Abstract][Full Text] [Related]
9. Sensitivity to sequencing depth in single-cell cancer genomics.
Alves JM; Posada D
Genome Med; 2018 Apr; 10(1):29. PubMed ID: 29661213
[TBL] [Abstract][Full Text] [Related]
10. The evolution of lung cancer and impact of subclonal selection in TRACERx.
Frankell AM; Dietzen M; Al Bakir M; Lim EL; Karasaki T; Ward S; Veeriah S; Colliver E; Huebner A; Bunkum A; Hill MS; Grigoriadis K; Moore DA; Black JRM; Liu WK; Thol K; Pich O; Watkins TBK; Naceur-Lombardelli C; Cook DE; Salgado R; Wilson GA; Bailey C; Angelova M; Bentham R; Martínez-Ruiz C; Abbosh C; Nicholson AG; Le Quesne J; Biswas D; Rosenthal R; Puttick C; Hessey S; Lee C; Prymas P; Toncheva A; Smith J; Xing W; Nicod J; Price G; Kerr KM; Naidu B; Middleton G; Blyth KG; Fennell DA; Forster MD; Lee SM; Falzon M; Hewish M; Shackcloth MJ; Lim E; Benafif S; Russell P; Boleti E; Krebs MG; Lester JF; Papadatos-Pastos D; Ahmad T; Thakrar RM; Lawrence D; Navani N; Janes SM; Dive C; Blackhall FH; Summers Y; Cave J; Marafioti T; Herrero J; Quezada SA; Peggs KS; Schwarz RF; Van Loo P; Miedema DM; Birkbak NJ; Hiley CT; Hackshaw A; Zaccaria S; ; Jamal-Hanjani M; McGranahan N; Swanton C
Nature; 2023 Apr; 616(7957):525-533. PubMed ID: 37046096
[TBL] [Abstract][Full Text] [Related]
11. CONIPHER: a computational framework for scalable phylogenetic reconstruction with error correction.
Grigoriadis K; Huebner A; Bunkum A; Colliver E; Frankell AM; Hill MS; Thol K; Birkbak NJ; Swanton C; Zaccaria S; McGranahan N
Nat Protoc; 2024 Jan; 19(1):159-183. PubMed ID: 38017136
[TBL] [Abstract][Full Text] [Related]
12. Pervasive chromosomal instability and karyotype order in tumour evolution.
Watkins TBK; Lim EL; Petkovic M; Elizalde S; Birkbak NJ; Wilson GA; Moore DA; Grönroos E; Rowan A; Dewhurst SM; Demeulemeester J; Dentro SC; Horswell S; Au L; Haase K; Escudero M; Rosenthal R; Bakir MA; Xu H; Litchfield K; Lu WT; Mourikis TP; Dietzen M; Spain L; Cresswell GD; Biswas D; Lamy P; Nordentoft I; Harbst K; Castro-Giner F; Yates LR; Caramia F; Jaulin F; Vicier C; Tomlinson IPM; Brastianos PK; Cho RJ; Bastian BC; Dyrskjøt L; Jönsson GB; Savas P; Loi S; Campbell PJ; Andre F; Luscombe NM; Steeghs N; Tjan-Heijnen VCG; Szallasi Z; Turajlic S; Jamal-Hanjani M; Van Loo P; Bakhoum SF; Schwarz RF; McGranahan N; Swanton C
Nature; 2020 Nov; 587(7832):126-132. PubMed ID: 32879494
[TBL] [Abstract][Full Text] [Related]
13. Signatures of copy number alterations in human cancer.
Steele CD; Abbasi A; Islam SMA; Bowes AL; Khandekar A; Haase K; Hames-Fathi S; Ajayi D; Verfaillie A; Dhami P; McLatchie A; Lechner M; Light N; Shlien A; Malkin D; Feber A; Proszek P; Lesluyes T; Mertens F; Flanagan AM; Tarabichi M; Van Loo P; Alexandrov LB; Pillay N
Nature; 2022 Jun; 606(7916):984-991. PubMed ID: 35705804
[TBL] [Abstract][Full Text] [Related]
14. Evolution of late-stage metastatic melanoma is dominated by aneuploidy and whole genome doubling.
Vergara IA; Mintoff CP; Sandhu S; McIntosh L; Young RJ; Wong SQ; Colebatch A; Cameron DL; Kwon JL; Wolfe R; Peng A; Ellul J; Dou X; Fedele C; Boyle S; Arnau GM; Raleigh J; Hatzimihalis A; Szeto P; Mooi J; Widmer DS; Cheng PF; Amann V; Dummer R; Hayward N; Wilmott J; Scolyer RA; Cho RJ; Bowtell D; Thorne H; Alsop K; Cordner S; Woodford N; Leditschke J; O'Brien P; Dawson SJ; McArthur GA; Mann GJ; Levesque MP; Papenfuss AT; Shackleton M
Nat Commun; 2021 Mar; 12(1):1434. PubMed ID: 33664264
[TBL] [Abstract][Full Text] [Related]
15. Pan-cancer inference of intra-tumor heterogeneity reveals associations with different forms of genomic instability.
Raynaud F; Mina M; Tavernari D; Ciriello G
PLoS Genet; 2018 Sep; 14(9):e1007669. PubMed ID: 30212491
[TBL] [Abstract][Full Text] [Related]
16. COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data.
Sollier E; Kuipers J; Takahashi K; Beerenwinkel N; Jahn K
Nat Commun; 2023 Aug; 14(1):4921. PubMed ID: 37582954
[TBL] [Abstract][Full Text] [Related]
17. Interplay between whole-genome doubling and the accumulation of deleterious alterations in cancer evolution.
López S; Lim EL; Horswell S; Haase K; Huebner A; Dietzen M; Mourikis TP; Watkins TBK; Rowan A; Dewhurst SM; Birkbak NJ; Wilson GA; Van Loo P; Jamal-Hanjani M; ; Swanton C; McGranahan N
Nat Genet; 2020 Mar; 52(3):283-293. PubMed ID: 32139907
[TBL] [Abstract][Full Text] [Related]
18. PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors.
Deshwar AG; Vembu S; Yung CK; Jang GH; Stein L; Morris Q
Genome Biol; 2015 Feb; 16(1):35. PubMed ID: 25786235
[TBL] [Abstract][Full Text] [Related]
19. Multiregional Tumor Trees Are Not Phylogenies.
Alves JM; Prieto T; Posada D
Trends Cancer; 2017 Aug; 3(8):546-550. PubMed ID: 28780931
[TBL] [Abstract][Full Text] [Related]
20. Spatial and temporal clonal evolution of intrahepatic cholangiocarcinoma.
Dong LQ; Shi Y; Ma LJ; Yang LX; Wang XY; Zhang S; Wang ZC; Duan M; Zhang Z; Liu LZ; Zheng BH; Ding ZB; Ke AW; Gao DM; Yuan K; Zhou J; Fan J; Xi R; Gao Q
J Hepatol; 2018 Jul; 69(1):89-98. PubMed ID: 29551704
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
