These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
134 related articles for article (PubMed ID: 36379761)
1. Supervised learning and the finite-temperature string method for computing committor functions and reaction rates. Hasyim MR; Batton CH; Mandadapu KK J Chem Phys; 2022 Nov; 157(18):184111. PubMed ID: 36379761 [TBL] [Abstract][Full Text] [Related]
2. Transition-Path Theory Calculations on Non-Uniform Meshes in Two and Three Dimensions using Finite Elements. Lapelosa M; Abrams CF Comput Phys Commun; 2013 Oct; 184(10):2310-2315. PubMed ID: 24014889 [TBL] [Abstract][Full Text] [Related]
3. Transition pathways in complex systems: Application of the finite-temperature string method to the alanine dipeptide. Ren W; Vanden-Eijnden E; Maragakis P; E W J Chem Phys; 2005 Oct; 123(13):134109. PubMed ID: 16223277 [TBL] [Abstract][Full Text] [Related]
4. On committor functions in milestoning. Ji X; Wang R; Wang H; Liu W J Chem Phys; 2023 Dec; 159(24):. PubMed ID: 38153148 [TBL] [Abstract][Full Text] [Related]
5. Discovering Reaction Pathways, Slow Variables, and Committor Probabilities with Machine Learning. Chen H; Roux B; Chipot C J Chem Theory Comput; 2023 Jul; 19(14):4414-4426. PubMed ID: 37224455 [TBL] [Abstract][Full Text] [Related]
6. Finite temperature string method with umbrella sampling using path collective variables: application to secondary structure change in a protein. Kulshrestha A; Punnathanam SN; Ayappa KG Soft Matter; 2022 Oct; 18(39):7593-7603. PubMed ID: 36165347 [TBL] [Abstract][Full Text] [Related]
7. Committor of elementary reactions on multistate systems. Király P; Kiss DJ; Tóth G J Chem Phys; 2018 Apr; 148(13):134107. PubMed ID: 29626886 [TBL] [Abstract][Full Text] [Related]
8. Approximating free energy and committor landscapes in standard transition path sampling using virtual interface exchange. Brotzakis ZF; Bolhuis PG J Chem Phys; 2019 Nov; 151(17):174111. PubMed ID: 31703501 [TBL] [Abstract][Full Text] [Related]
18. Nonequilibrium umbrella sampling in spaces of many order parameters. Dickson A; Warmflash A; Dinner AR J Chem Phys; 2009 Feb; 130(7):074104. PubMed ID: 19239281 [TBL] [Abstract][Full Text] [Related]
19. Finite Temperature String Method with Umbrella Sampling: Application on a Side Chain Flipping in Mhp1 Transporter. Song HD; Zhu F J Phys Chem B; 2017 Apr; 121(15):3376-3386. PubMed ID: 27959537 [TBL] [Abstract][Full Text] [Related]
20. String Method with Swarms-of-Trajectories, Mean Drifts, Lag Time, and Committor. Roux B J Phys Chem A; 2021 Sep; 125(34):7558-7571. PubMed ID: 34406010 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]