These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

173 related articles for article (PubMed ID: 36413069)

  • 1. AlphaPulldown-a python package for protein-protein interaction screens using AlphaFold-Multimer.
    Yu D; Chojnowski G; Rosenthal M; Kosinski J
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36413069
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Enhancing AlphaFold-Multimer-based Protein Complex Structure Prediction with MULTICOM in CASP15.
    Liu J; Guo Z; Wu T; Roy RS; Quadir F; Chen C; Cheng J
    bioRxiv; 2023 May; ():. PubMed ID: 37293073
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes.
    Zhu W; Shenoy A; Kundrotas P; Elofsson A
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37405868
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Topsy-Turvy: integrating a global view into sequence-based PPI prediction.
    Singh R; Devkota K; Sledzieski S; Berger B; Cowen L
    Bioinformatics; 2022 Jun; 38(Suppl 1):i264-i272. PubMed ID: 35758793
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Using AlphaFold Multimer to discover interkingdom protein-protein interactions.
    Homma F; Lyu J; van der Hoorn RAL
    Plant J; 2024 Oct; 120(1):19-28. PubMed ID: 39152709
    [TBL] [Abstract][Full Text] [Related]  

  • 6. runBNG: a software package for BioNano genomic analysis on the command line.
    Yuan Y; Bayer PE; Lee HT; Edwards D
    Bioinformatics; 2017 Oct; 33(19):3107-3109. PubMed ID: 28605539
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SpatialPPI: Three-dimensional space protein-protein interaction prediction with AlphaFold Multimer.
    Hu W; Ohue M
    Comput Struct Biotechnol J; 2024 Dec; 23():1214-1225. PubMed ID: 38545599
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15.
    Liu J; Guo Z; Wu T; Roy RS; Quadir F; Chen C; Cheng J
    Commun Biol; 2023 Nov; 6(1):1140. PubMed ID: 37949999
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GfaPy: a flexible and extensible software library for handling sequence graphs in Python.
    Gonnella G; Kurtz S
    Bioinformatics; 2017 Oct; 33(19):3094-3095. PubMed ID: 28645150
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improving peptide-protein docking with AlphaFold-Multimer using forced sampling.
    Johansson-Åkhe I; Wallner B
    Front Bioinform; 2022; 2():959160. PubMed ID: 36304330
    [TBL] [Abstract][Full Text] [Related]  

  • 11. AlphaFold-multimer predicts ATG8 protein binding motifs crucial for autophagy research.
    Olsvik HL; Johansen T
    PLoS Biol; 2023 Feb; 21(2):e3002002. PubMed ID: 36848650
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GSEApy: a comprehensive package for performing gene set enrichment analysis in Python.
    Fang Z; Liu X; Peltz G
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36426870
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PAE viewer: a webserver for the interactive visualization of the predicted aligned error for multimer structure predictions and crosslinks.
    Elfmann C; Stülke J
    Nucleic Acids Res; 2023 Jul; 51(W1):W404-W410. PubMed ID: 37140053
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ConKit: a python interface to contact predictions.
    Simkovic F; Thomas JMH; Rigden DJ
    Bioinformatics; 2017 Jul; 33(14):2209-2211. PubMed ID: 28369168
    [TBL] [Abstract][Full Text] [Related]  

  • 15. BYASE: a Python library for estimating gene and isoform level allele-specific expression.
    Dong L; Wang J; Wang G
    Bioinformatics; 2020 Dec; 36(19):4955-4956. PubMed ID: 32678892
    [TBL] [Abstract][Full Text] [Related]  

  • 16. AFsample: improving multimer prediction with AlphaFold using massive sampling.
    Wallner B
    Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37713472
    [TBL] [Abstract][Full Text] [Related]  

  • 17. AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge.
    Voytik E; Bludau I; Willems S; Hansen FM; Brunner AD; Strauss MT; Mann M
    Bioinformatics; 2022 Jan; 38(3):849-852. PubMed ID: 34586352
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Prediction of protein assemblies by structure sampling followed by interface-focused scoring.
    Olechnovič K; Valančauskas L; Dapkūnas J; Venclovas Č
    Proteins; 2023 Dec; 91(12):1724-1733. PubMed ID: 37578163
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PIQLE: protein-protein interface quality estimation by deep graph learning of multimeric interaction geometries.
    Shuvo MH; Karim M; Roche R; Bhattacharya D
    Bioinform Adv; 2023; 3(1):vbad070. PubMed ID: 37351310
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PDBImages: a command-line tool for automated macromolecular structure visualization.
    Midlik A; Nair S; Anyango S; Deshpande M; Sehnal D; Varadi M; Velankar S
    Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38085238
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.