These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
189 related articles for article (PubMed ID: 36416228)
1. Conformational Change of Transcription Factors from Search to Specific Binding: A Lüking M; Elf J; Levy Y J Phys Chem B; 2022 Dec; 126(48):9971-9984. PubMed ID: 36416228 [TBL] [Abstract][Full Text] [Related]
2. DNA surface exploration and operator bypassing during target search. Marklund E; van Oosten B; Mao G; Amselem E; Kipper K; Sabantsev A; Emmerich A; Globisch D; Zheng X; Lehmann LC; Berg OG; Johansson M; Elf J; Deindl S Nature; 2020 Jul; 583(7818):858-861. PubMed ID: 32581356 [TBL] [Abstract][Full Text] [Related]
3. Sliding of a single lac repressor protein along DNA is tuned by DNA sequence and molecular switching. Tempestini A; Monico C; Gardini L; Vanzi F; Pavone FS; Capitanio M Nucleic Acids Res; 2018 Jun; 46(10):5001-5011. PubMed ID: 29584872 [TBL] [Abstract][Full Text] [Related]
4. DNA recognition process of the lactose repressor protein studied via metadynamics and umbrella sampling simulations. Furini S; Domene C J Phys Chem B; 2014 Nov; 118(46):13059-65. PubMed ID: 25341013 [TBL] [Abstract][Full Text] [Related]
6. Insights into the sliding movement of the lac repressor nonspecifically bound to DNA. Furini S; Domene C; Cavalcanti S J Phys Chem B; 2010 Feb; 114(6):2238-45. PubMed ID: 20095570 [TBL] [Abstract][Full Text] [Related]
7. What matters for lac repressor search in vivo--sliding, hopping, intersegment transfer, crowding on DNA or recognition? Mahmutovic A; Berg OG; Elf J Nucleic Acids Res; 2015 Apr; 43(7):3454-64. PubMed ID: 25779051 [TBL] [Abstract][Full Text] [Related]
8. Tracking Low-Copy Transcription Factors in Living Bacteria: The Case of the lac Repressor. Garza de Leon F; Sellars L; Stracy M; Busby SJW; Kapanidis AN Biophys J; 2017 Apr; 112(7):1316-1327. PubMed ID: 28402875 [TBL] [Abstract][Full Text] [Related]
9. DNA Internal Motion Likely Accelerates Protein Target Search in a Packed Nucleoid. Chow E; Skolnick J Biophys J; 2017 Jun; 112(11):2261-2270. PubMed ID: 28591599 [TBL] [Abstract][Full Text] [Related]
10. Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site. Frank DE; Saecker RM; Bond JP; Capp MW; Tsodikov OV; Melcher SE; Levandoski MM; Record MT J Mol Biol; 1997 Apr; 267(5):1186-206. PubMed ID: 9150406 [TBL] [Abstract][Full Text] [Related]
11. Hinge-helix formation and DNA bending in various lac repressor-operator complexes. Spronk CA; Folkers GE; Noordman AM; Wechselberger R; van den Brink N; Boelens R; Kaptein R EMBO J; 1999 Nov; 18(22):6472-80. PubMed ID: 10562559 [TBL] [Abstract][Full Text] [Related]
12. Strong DNA binding by covalently linked dimeric Lac headpiece: evidence for the crucial role of the hinge helices. Kalodimos CG; Folkers GE; Boelens R; Kaptein R Proc Natl Acad Sci U S A; 2001 May; 98(11):6039-44. PubMed ID: 11353825 [TBL] [Abstract][Full Text] [Related]
15. Exploring LacI-DNA dynamics by multiscale simulations using the SIRAH force field. Machado MR; Pantano S J Chem Theory Comput; 2015 Oct; 11(10):5012-23. PubMed ID: 26574286 [TBL] [Abstract][Full Text] [Related]
16. Fine-tuning function: correlation of hinge domain interactions with functional distinctions between LacI and PurR. Swint-Kruse L; Larson C; Pettitt BM; Matthews KS Protein Sci; 2002 Apr; 11(4):778-94. PubMed ID: 11910022 [TBL] [Abstract][Full Text] [Related]
17. Protein-induced DNA linking number change by sequence-specific DNA binding proteins and its biological effects. Leng F Biophys Rev; 2016 Nov; 8(Suppl 1):123-133. PubMed ID: 28510217 [TBL] [Abstract][Full Text] [Related]
18. Protein-induced DNA linking number change by sequence-specific DNA binding proteins and its biological effects. Leng F Biophys Rev; 2016 Sep; 8(3):197-207. PubMed ID: 28510223 [TBL] [Abstract][Full Text] [Related]
19. The Hinge Region Strengthens the Nonspecific Interaction between Lac-Repressor and DNA: A Computer Simulation Study. Sun L; Tabaka M; Hou S; Li L; Burdzy K; Aksimentiev A; Maffeo C; Zhang X; Holyst R PLoS One; 2016; 11(3):e0152002. PubMed ID: 27008630 [TBL] [Abstract][Full Text] [Related]
20. Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application to in vivo data. Tabaka M; Burdzy K; Hołyst R Phys Rev E Stat Nonlin Soft Matter Phys; 2015 Aug; 92(2):022721. PubMed ID: 26382446 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]