These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

238 related articles for article (PubMed ID: 36416536)

  • 1. End-to-End Protein Normal Mode Frequency Predictions Using Language and Graph Models and Application to Sonification.
    Hu Y; Buehler MJ
    ACS Nano; 2022 Dec; 16(12):20656-20670. PubMed ID: 36416536
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Multiscale Modeling at the Interface of Molecular Mechanics and Natural Language through Attention Neural Networks.
    Buehler MJ
    Acc Chem Res; 2022 Dec; 55(23):3387-3403. PubMed ID: 36378952
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Combining protein sequences and structures with transformers and equivariant graph neural networks to predict protein function.
    Boadu F; Cao H; Cheng J
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i318-i325. PubMed ID: 37387145
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A Self-Consistent Sonification Method to Translate Amino Acid Sequences into Musical Compositions and Application in Protein Design Using Artificial Intelligence.
    Yu CH; Qin Z; Martin-Martinez FJ; Buehler MJ
    ACS Nano; 2019 Jul; 13(7):7471-7482. PubMed ID: 31240912
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Hierarchical graph transformer with contrastive learning for protein function prediction.
    Gu Z; Luo X; Chen J; Deng M; Lai L
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37369035
    [TBL] [Abstract][Full Text] [Related]  

  • 6. EquiPNAS: improved protein-nucleic acid binding site prediction using protein-language-model-informed equivariant deep graph neural networks.
    Roche R; Moussad B; Shuvo MH; Tarafder S; Bhattacharya D
    Nucleic Acids Res; 2024 Mar; 52(5):e27. PubMed ID: 38281252
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Combining protein sequences and structures with transformers and equivariant graph neural networks to predict protein function.
    Boadu F; Cao H; Cheng J
    bioRxiv; 2023 Jan; ():. PubMed ID: 36711471
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CollagenTransformer: End-to-End Transformer Model to Predict Thermal Stability of Collagen Triple Helices Using an NLP Approach.
    Khare E; Gonzalez-Obeso C; Kaplan DL; Buehler MJ
    ACS Biomater Sci Eng; 2022 Oct; 8(10):4301-4310. PubMed ID: 36149671
    [TBL] [Abstract][Full Text] [Related]  

  • 9. 3D-equivariant graph neural networks for protein model quality assessment.
    Chen C; Chen X; Morehead A; Wu T; Cheng J
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36637199
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assembled graph neural network using graph transformer with edges for protein model quality assessment.
    Dong S; Wang S
    J Mol Graph Model; 2022 Jan; 110():108053. PubMed ID: 34773871
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Long-distance dependency combined multi-hop graph neural networks for protein-protein interactions prediction.
    Zhong W; He C; Xiao C; Liu Y; Qin X; Yu Z
    BMC Bioinformatics; 2022 Dec; 23(1):521. PubMed ID: 36471248
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Rapid prediction of protein natural frequencies using graph neural networks.
    Guo K; Buehler MJ
    Digit Discov; 2022 Jun; 1(3):277-285. PubMed ID: 35769204
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Efficient prediction of peptide self-assembly through sequential and graphical encoding.
    Liu Z; Wang J; Luo Y; Zhao S; Li W; Li SZ
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37974507
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information.
    Jiao P; Wang B; Wang X; Liu B; Wang Y; Li J
    Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37847755
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evotuning protocols for Transformer-based variant effect prediction on multi-domain proteins.
    Yamaguchi H; Saito Y
    Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34180966
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Transformer-based deep learning for predicting protein properties in the life sciences.
    Chandra A; Tünnermann L; Löfstedt T; Gratz R
    Elife; 2023 Jan; 12():. PubMed ID: 36651724
    [TBL] [Abstract][Full Text] [Related]  

  • 17. T-MGCL: Molecule Graph Contrastive Learning Based on Transformer for Molecular Property Prediction.
    Guan X; Zhang D
    IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(6):3851-3862. PubMed ID: 37856269
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Describe Molecules by a Heterogeneous Graph Neural Network with Transformer-like Attention for Supervised Property Predictions.
    Deng D; Lei Z; Hong X; Zhang R; Zhou F
    ACS Omega; 2022 Feb; 7(4):3713-3721. PubMed ID: 35128279
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Graph Neural Network-Based Diagnosis Prediction.
    Li Y; Qian B; Zhang X; Liu H
    Big Data; 2020 Oct; 8(5):379-390. PubMed ID: 32783631
    [TBL] [Abstract][Full Text] [Related]  

  • 20. HNetGO: protein function prediction via heterogeneous network transformer.
    Zhang X; Guo H; Zhang F; Wang X; Wu K; Qiu S; Liu B; Wang Y; Hu Y; Li J
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37861172
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.