BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

228 related articles for article (PubMed ID: 36420896)

  • 1. GENCODE: reference annotation for the human and mouse genomes in 2023.
    Frankish A; Carbonell-Sala S; Diekhans M; Jungreis I; Loveland JE; Mudge JM; Sisu C; Wright JC; Arnan C; Barnes I; Banerjee A; Bennett R; Berry A; Bignell A; Boix C; Calvet F; Cerdán-Vélez D; Cunningham F; Davidson C; Donaldson S; Dursun C; Fatima R; Giorgetti S; Giron CG; Gonzalez JM; Hardy M; Harrison PW; Hourlier T; Hollis Z; Hunt T; James B; Jiang Y; Johnson R; Kay M; Lagarde J; Martin FJ; Gómez LM; Nair S; Ni P; Pozo F; Ramalingam V; Ruffier M; Schmitt BM; Schreiber JM; Steed E; Suner MM; Sumathipala D; Sycheva I; Uszczynska-Ratajczak B; Wass E; Yang YT; Yates A; Zafrulla Z; Choudhary JS; Gerstein M; Guigo R; Hubbard TJP; Kellis M; Kundaje A; Paten B; Tress ML; Flicek P
    Nucleic Acids Res; 2023 Jan; 51(D1):D942-D949. PubMed ID: 36420896
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GENCODE 2021.
    Frankish A; Diekhans M; Jungreis I; Lagarde J; Loveland JE; Mudge JM; Sisu C; Wright JC; Armstrong J; Barnes I; Berry A; Bignell A; Boix C; Carbonell Sala S; Cunningham F; Di Domenico T; Donaldson S; Fiddes IT; García Girón C; Gonzalez JM; Grego T; Hardy M; Hourlier T; Howe KL; Hunt T; Izuogu OG; Johnson R; Martin FJ; Martínez L; Mohanan S; Muir P; Navarro FCP; Parker A; Pei B; Pozo F; Riera FC; Ruffier M; Schmitt BM; Stapleton E; Suner MM; Sycheva I; Uszczynska-Ratajczak B; Wolf MY; Xu J; Yang YT; Yates A; Zerbino D; Zhang Y; Choudhary JS; Gerstein M; Guigó R; Hubbard TJP; Kellis M; Paten B; Tress ML; Flicek P
    Nucleic Acids Res; 2021 Jan; 49(D1):D916-D923. PubMed ID: 33270111
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GENCODE reference annotation for the human and mouse genomes.
    Frankish A; Diekhans M; Ferreira AM; Johnson R; Jungreis I; Loveland J; Mudge JM; Sisu C; Wright J; Armstrong J; Barnes I; Berry A; Bignell A; Carbonell Sala S; Chrast J; Cunningham F; Di Domenico T; Donaldson S; Fiddes IT; García Girón C; Gonzalez JM; Grego T; Hardy M; Hourlier T; Hunt T; Izuogu OG; Lagarde J; Martin FJ; Martínez L; Mohanan S; Muir P; Navarro FCP; Parker A; Pei B; Pozo F; Ruffier M; Schmitt BM; Stapleton E; Suner MM; Sycheva I; Uszczynska-Ratajczak B; Xu J; Yates A; Zerbino D; Zhang Y; Aken B; Choudhary JS; Gerstein M; Guigó R; Hubbard TJP; Kellis M; Paten B; Reymond A; Tress ML; Flicek P
    Nucleic Acids Res; 2019 Jan; 47(D1):D766-D773. PubMed ID: 30357393
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GENCODE: the reference human genome annotation for The ENCODE Project.
    Harrow J; Frankish A; Gonzalez JM; Tapanari E; Diekhans M; Kokocinski F; Aken BL; Barrell D; Zadissa A; Searle S; Barnes I; Bignell A; Boychenko V; Hunt T; Kay M; Mukherjee G; Rajan J; Despacio-Reyes G; Saunders G; Steward C; Harte R; Lin M; Howald C; Tanzer A; Derrien T; Chrast J; Walters N; Balasubramanian S; Pei B; Tress M; Rodriguez JM; Ezkurdia I; van Baren J; Brent M; Haussler D; Kellis M; Valencia A; Reymond A; Gerstein M; Guigó R; Hubbard TJ
    Genome Res; 2012 Sep; 22(9):1760-74. PubMed ID: 22955987
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction.
    Frankish A; Uszczynska B; Ritchie GR; Gonzalez JM; Pervouchine D; Petryszak R; Mudge JM; Fonseca N; Brazma A; Guigo R; Harrow J
    BMC Genomics; 2015; 16 Suppl 8(Suppl 8):S2. PubMed ID: 26110515
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GENCODE: producing a reference annotation for ENCODE.
    Harrow J; Denoeud F; Frankish A; Reymond A; Chen CK; Chrast J; Lagarde J; Gilbert JG; Storey R; Swarbreck D; Rossier C; Ucla C; Hubbard T; Antonarakis SE; Guigo R
    Genome Biol; 2006; 7 Suppl 1(Suppl 1):S4.1-9. PubMed ID: 16925838
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The UCSC Genome Browser database: 2021 update.
    Navarro Gonzalez J; Zweig AS; Speir ML; Schmelter D; Rosenbloom KR; Raney BJ; Powell CC; Nassar LR; Maulding ND; Lee CM; Lee BT; Hinrichs AS; Fyfe AC; Fernandes JD; Diekhans M; Clawson H; Casper J; Benet-Pagès A; Barber GP; Haussler D; Kuhn RM; Haeussler M; Kent WJ
    Nucleic Acids Res; 2021 Jan; 49(D1):D1046-D1057. PubMed ID: 33221922
    [TBL] [Abstract][Full Text] [Related]  

  • 8. AceView: a comprehensive cDNA-supported gene and transcripts annotation.
    Thierry-Mieg D; Thierry-Mieg J
    Genome Biol; 2006; 7 Suppl 1(Suppl 1):S12.1-14. PubMed ID: 16925834
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A joint NCBI and EMBL-EBI transcript set for clinical genomics and research.
    Morales J; Pujar S; Loveland JE; Astashyn A; Bennett R; Berry A; Cox E; Davidson C; Ermolaeva O; Farrell CM; Fatima R; Gil L; Goldfarb T; Gonzalez JM; Haddad D; Hardy M; Hunt T; Jackson J; Joardar VS; Kay M; Kodali VK; McGarvey KM; McMahon A; Mudge JM; Murphy DN; Murphy MR; Rajput B; Rangwala SH; Riddick LD; Thibaud-Nissen F; Threadgold G; Vatsan AR; Wallin C; Webb D; Flicek P; Birney E; Pruitt KD; Frankish A; Cunningham F; Murphy TD
    Nature; 2022 Apr; 604(7905):310-315. PubMed ID: 35388217
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Incorporating the human gene annotations in different databases significantly improved transcriptomic and genetic analyses.
    Chen G; Wang C; Shi L; Qu X; Chen J; Yang J; Shi C; Chen L; Zhou P; Ning B; Tong W; Shi T
    RNA; 2013 Apr; 19(4):479-89. PubMed ID: 23431329
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The value of primary transcripts to the clinical and non-clinical genomics community: Survey results and roadmap for improvements.
    Morales J; McMahon AC; Loveland J; Perry E; Frankish A; Hunt S; Armean IM; Flicek P; Cunningham F
    Mol Genet Genomic Med; 2021 Dec; 9(12):e1786. PubMed ID: 34435752
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome.
    Howald C; Tanzer A; Chrast J; Kokocinski F; Derrien T; Walters N; Gonzalez JM; Frankish A; Aken BL; Hourlier T; Vogel JH; White S; Searle S; Harrow J; Hubbard TJ; Guigó R; Reymond A
    Genome Res; 2012 Sep; 22(9):1698-710. PubMed ID: 22955982
    [TBL] [Abstract][Full Text] [Related]  

  • 13. High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.
    Lagarde J; Uszczynska-Ratajczak B; Carbonell S; Pérez-Lluch S; Abad A; Davis C; Gingeras TR; Frankish A; Harrow J; Guigo R; Johnson R
    Nat Genet; 2017 Dec; 49(12):1731-1740. PubMed ID: 29106417
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Creating reference gene annotation for the mouse C57BL6/J genome assembly.
    Mudge JM; Harrow J
    Mamm Genome; 2015 Oct; 26(9-10):366-78. PubMed ID: 26187010
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GENCODE Pseudogenes.
    Sisu C
    Methods Mol Biol; 2021; 2324():67-82. PubMed ID: 34165709
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Ensembl 2019.
    Cunningham F; Achuthan P; Akanni W; Allen J; Amode MR; Armean IM; Bennett R; Bhai J; Billis K; Boddu S; Cummins C; Davidson C; Dodiya KJ; Gall A; Girón CG; Gil L; Grego T; Haggerty L; Haskell E; Hourlier T; Izuogu OG; Janacek SH; Juettemann T; Kay M; Laird MR; Lavidas I; Liu Z; Loveland JE; Marugán JC; Maurel T; McMahon AC; Moore B; Morales J; Mudge JM; Nuhn M; Ogeh D; Parker A; Parton A; Patricio M; Abdul Salam AI; Schmitt BM; Schuilenburg H; Sheppard D; Sparrow H; Stapleton E; Szuba M; Taylor K; Threadgold G; Thormann A; Vullo A; Walts B; Winterbottom A; Zadissa A; Chakiachvili M; Frankish A; Hunt SE; Kostadima M; Langridge N; Martin FJ; Muffato M; Perry E; Ruffier M; Staines DM; Trevanion SJ; Aken BL; Yates AD; Zerbino DR; Flicek P
    Nucleic Acids Res; 2019 Jan; 47(D1):D745-D751. PubMed ID: 30407521
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The Ensembl gene annotation system.
    Aken BL; Ayling S; Barrell D; Clarke L; Curwen V; Fairley S; Fernandez Banet J; Billis K; García Girón C; Hourlier T; Howe K; Kähäri A; Kokocinski F; Martin FJ; Murphy DN; Nag R; Ruffier M; Schuster M; Tang YA; Vogel JH; White S; Zadissa A; Flicek P; Searle SM
    Database (Oxford); 2016; 2016():. PubMed ID: 27337980
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ensembl 2020.
    Yates AD; Achuthan P; Akanni W; Allen J; Allen J; Alvarez-Jarreta J; Amode MR; Armean IM; Azov AG; Bennett R; Bhai J; Billis K; Boddu S; Marugán JC; Cummins C; Davidson C; Dodiya K; Fatima R; Gall A; Giron CG; Gil L; Grego T; Haggerty L; Haskell E; Hourlier T; Izuogu OG; Janacek SH; Juettemann T; Kay M; Lavidas I; Le T; Lemos D; Martinez JG; Maurel T; McDowall M; McMahon A; Mohanan S; Moore B; Nuhn M; Oheh DN; Parker A; Parton A; Patricio M; Sakthivel MP; Abdul Salam AI; Schmitt BM; Schuilenburg H; Sheppard D; Sycheva M; Szuba M; Taylor K; Thormann A; Threadgold G; Vullo A; Walts B; Winterbottom A; Zadissa A; Chakiachvili M; Flint B; Frankish A; Hunt SE; IIsley G; Kostadima M; Langridge N; Loveland JE; Martin FJ; Morales J; Mudge JM; Muffato M; Perry E; Ruffier M; Trevanion SJ; Cunningham F; Howe KL; Zerbino DR; Flicek P
    Nucleic Acids Res; 2020 Jan; 48(D1):D682-D688. PubMed ID: 31691826
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The UCSC Genome Browser database: 2019 update.
    Haeussler M; Zweig AS; Tyner C; Speir ML; Rosenbloom KR; Raney BJ; Lee CM; Lee BT; Hinrichs AS; Gonzalez JN; Gibson D; Diekhans M; Clawson H; Casper J; Barber GP; Haussler D; Kuhn RM; Kent WJ
    Nucleic Acids Res; 2019 Jan; 47(D1):D853-D858. PubMed ID: 30407534
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Ensembl 2021.
    Howe KL; Achuthan P; Allen J; Allen J; Alvarez-Jarreta J; Amode MR; Armean IM; Azov AG; Bennett R; Bhai J; Billis K; Boddu S; Charkhchi M; Cummins C; Da Rin Fioretto L; Davidson C; Dodiya K; El Houdaigui B; Fatima R; Gall A; Garcia Giron C; Grego T; Guijarro-Clarke C; Haggerty L; Hemrom A; Hourlier T; Izuogu OG; Juettemann T; Kaikala V; Kay M; Lavidas I; Le T; Lemos D; Gonzalez Martinez J; Marugán JC; Maurel T; McMahon AC; Mohanan S; Moore B; Muffato M; Oheh DN; Paraschas D; Parker A; Parton A; Prosovetskaia I; Sakthivel MP; Salam AIA; Schmitt BM; Schuilenburg H; Sheppard D; Steed E; Szpak M; Szuba M; Taylor K; Thormann A; Threadgold G; Walts B; Winterbottom A; Chakiachvili M; Chaubal A; De Silva N; Flint B; Frankish A; Hunt SE; IIsley GR; Langridge N; Loveland JE; Martin FJ; Mudge JM; Morales J; Perry E; Ruffier M; Tate J; Thybert D; Trevanion SJ; Cunningham F; Yates AD; Zerbino DR; Flicek P
    Nucleic Acids Res; 2021 Jan; 49(D1):D884-D891. PubMed ID: 33137190
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.