BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 36449158)

  • 1. Genotyping of Transposable Element Insertions Segregating in Human Populations Using Short-Read Realignments.
    Chen X; Bourque G; Goubert C
    Methods Mol Biol; 2023; 2607():63-83. PubMed ID: 36449158
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A Pangenome Approach to Detect and Genotype TE Insertion Polymorphisms.
    Groza C; Bourque G; Goubert C
    Methods Mol Biol; 2023; 2607():85-94. PubMed ID: 36449159
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ERVcaller: identifying polymorphic endogenous retrovirus and other transposable element insertions using whole-genome sequencing data.
    Chen X; Li D
    Bioinformatics; 2019 Oct; 35(20):3913-3922. PubMed ID: 30895294
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Identification and Genotyping of Transposable Element Insertions From Genome Sequencing Data.
    Chu C; Zhao B; Park PJ; Lee EA
    Curr Protoc Hum Genet; 2020 Sep; 107(1):e102. PubMed ID: 32662945
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Efficient Detection of Transposable Element Insertion Polymorphisms Between Genomes Using Short-Read Sequencing Data.
    Baduel P; Quadrana L; Colot V
    Methods Mol Biol; 2021; 2250():157-169. PubMed ID: 33900602
    [TBL] [Abstract][Full Text] [Related]  

  • 6. T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data.
    Bogaerts-Márquez M; Barrón MG; Fiston-Lavier AS; Vendrell-Mir P; Castanera R; Casacuberta JM; González J
    Bioinformatics; 2020 Feb; 36(4):1191-1197. PubMed ID: 31580402
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice.
    Robb SM; Lu L; Valencia E; Burnette JM; Okumoto Y; Wessler SR; Stajich JE
    G3 (Bethesda); 2013 Jun; 3(6):949-57. PubMed ID: 23576519
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TEfinder: A Bioinformatics Pipeline for Detecting New Transposable Element Insertion Events in Next-Generation Sequencing Data.
    Sohrab V; López-Díaz C; Di Pietro A; Ma LJ; Ayhan DH
    Genes (Basel); 2021 Feb; 12(2):. PubMed ID: 33557410
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data.
    Stritt C; Roulin AC
    Methods Mol Biol; 2021; 2250():177-187. PubMed ID: 33900604
    [TBL] [Abstract][Full Text] [Related]  

  • 10. McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data.
    Nelson MG; Linheiro RS; Bergman CM
    G3 (Bethesda); 2017 Aug; 7(8):2763-2778. PubMed ID: 28637810
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Read count-based method for high-throughput allelic genotyping of transposable elements and structural variants.
    Kuhn A; Ong YM; Quake SR; Burkholder WF
    BMC Genomics; 2015 Jul; 16(1):508. PubMed ID: 26153459
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster.
    Kofler R; Betancourt AJ; Schlötterer C
    PLoS Genet; 2012 Jan; 8(1):e1002487. PubMed ID: 22291611
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Nanopore Sequencing to Identify Transposable Element Insertions and Their Epigenetic Modifications.
    Smits N; Faulkner GJ
    Methods Mol Biol; 2023; 2607():151-171. PubMed ID: 36449163
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evidence for positive selection on recent human transposable element insertions.
    Rishishwar L; Wang L; Wang J; Yi SV; Lachance J; Jordan IK
    Gene; 2018 Oct; 675():69-79. PubMed ID: 29953920
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.
    Mohamed M; Sabot F; Varoqui M; Mugat B; Audouin K; Pélisson A; Fiston-Lavier AS; Chambeyron S
    Genome Biol; 2023 Apr; 24(1):63. PubMed ID: 37013657
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Whole-genome variation of transposable element insertions in a maize diversity panel.
    Qiu Y; O'Connor CH; Della Coletta R; Renk JS; Monnahan PJ; Noshay JM; Liang Z; Gilbert A; Anderson SN; McGaugh SE; Springer NM; Hirsch CN
    G3 (Bethesda); 2021 Sep; 11(10):. PubMed ID: 34568911
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comprehensive identification of transposable element insertions using multiple sequencing technologies.
    Chu C; Borges-Monroy R; Viswanadham VV; Lee S; Li H; Lee EA; Park PJ
    Nat Commun; 2021 Jun; 12(1):3836. PubMed ID: 34158502
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RelocaTE2: a high resolution transposable element insertion site mapping tool for population resequencing.
    Chen J; Wrightsman TR; Wessler SR; Stajich JE
    PeerJ; 2017; 5():e2942. PubMed ID: 28149701
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Nanopore sequencing and Hi-C scaffolding provide insight into the evolutionary dynamics of transposable elements and piRNA production in wild strains of Drosophila melanogaster.
    Ellison CE; Cao W
    Nucleic Acids Res; 2020 Jan; 48(1):290-303. PubMed ID: 31754714
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Abundance and distribution of transposable elements in two Drosophila QTL mapping resources.
    Cridland JM; Macdonald SJ; Long AD; Thornton KR
    Mol Biol Evol; 2013 Oct; 30(10):2311-27. PubMed ID: 23883524
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.