BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

206 related articles for article (PubMed ID: 36449163)

  • 1. Nanopore Sequencing to Identify Transposable Element Insertions and Their Epigenetic Modifications.
    Smits N; Faulkner GJ
    Methods Mol Biol; 2023; 2607():151-171. PubMed ID: 36449163
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Nanopore Sequencing Enables Comprehensive Transposable Element Epigenomic Profiling.
    Ewing AD; Smits N; Sanchez-Luque FJ; Faivre J; Brennan PM; Richardson SR; Cheetham SW; Faulkner GJ
    Mol Cell; 2020 Dec; 80(5):915-928.e5. PubMed ID: 33186547
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology.
    Debladis E; Llauro C; Carpentier MC; Mirouze M; Panaud O
    BMC Genomics; 2017 Jul; 18(1):537. PubMed ID: 28715998
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Nanopore sequencing and Hi-C scaffolding provide insight into the evolutionary dynamics of transposable elements and piRNA production in wild strains of Drosophila melanogaster.
    Ellison CE; Cao W
    Nucleic Acids Res; 2020 Jan; 48(1):290-303. PubMed ID: 31754714
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A Transposon Story: From TE Content to TE Dynamic Invasion of
    Mohamed M; Dang NT; Ogyama Y; Burlet N; Mugat B; Boulesteix M; Mérel V; Veber P; Salces-Ortiz J; Severac D; Pélisson A; Vieira C; Sabot F; Fablet M; Chambeyron S
    Cells; 2020 Jul; 9(8):. PubMed ID: 32722451
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology.
    Lemay MA; Sibbesen JA; Torkamaneh D; Hamel J; Levesque RC; Belzile F
    BMC Biol; 2022 Feb; 20(1):53. PubMed ID: 35197050
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The insertion and dysregulation of transposable elements in osteosarcoma and their association with patient event-free survival.
    Wang C; Liang C
    Sci Rep; 2022 Jan; 12(1):377. PubMed ID: 35013466
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Genetic and epigenetic variation in transposable element expression responses to abiotic stress in maize.
    Liang Z; Anderson SN; Noshay JM; Crisp PA; Enders TA; Springer NM
    Plant Physiol; 2021 May; 186(1):420-433. PubMed ID: 33591319
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The Role of Small RNA-Based Epigenetic Silencing for Purifying Selection on Transposable Elements in Capsella grandiflora.
    Horvath R; Slotte T
    Genome Biol Evol; 2017 Oct; 9(10):2911-2920. PubMed ID: 29036316
    [TBL] [Abstract][Full Text] [Related]  

  • 10. TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.
    Mohamed M; Sabot F; Varoqui M; Mugat B; Audouin K; Pélisson A; Fiston-Lavier AS; Chambeyron S
    Genome Biol; 2023 Apr; 24(1):63. PubMed ID: 37013657
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identification and Genotyping of Transposable Element Insertions From Genome Sequencing Data.
    Chu C; Zhao B; Park PJ; Lee EA
    Curr Protoc Hum Genet; 2020 Sep; 107(1):e102. PubMed ID: 32662945
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons.
    Noshay JM; Marand AP; Anderson SN; Zhou P; Mejia Guerra MK; Lu Z; O'Connor CH; Crisp PA; Hirsch CN; Schmitz RJ; Springer NM
    Genetics; 2021 Mar; 217(1):1-13. PubMed ID: 33683350
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Localized assembly for long reads enables genome-wide analysis of repetitive regions at single-base resolution in human genomes.
    Ikemoto K; Fujimoto H; Fujimoto A
    Hum Genomics; 2023 Mar; 17(1):21. PubMed ID: 36895025
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genotyping of Transposable Element Insertions Segregating in Human Populations Using Short-Read Realignments.
    Chen X; Bourque G; Goubert C
    Methods Mol Biol; 2023; 2607():63-83. PubMed ID: 36449158
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Locus-level L1 DNA methylation profiling reveals the epigenetic and transcriptional interplay between L1s and their integration sites.
    Lanciano S; Philippe C; Sarkar A; Pratella D; Domrane C; Doucet AJ; van Essen D; Saccani S; Ferry L; Defossez PA; Cristofari G
    Cell Genom; 2024 Feb; 4(2):100498. PubMed ID: 38309261
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evaluation of nanopore sequencing for epigenetic epidemiology: a comparison with DNA methylation microarrays.
    Flynn R; Washer S; Jeffries AR; Andrayas A; Shireby G; Kumari M; Schalkwyk LC; Mill J; Hannon E
    Hum Mol Genet; 2022 Sep; 31(18):3181-3190. PubMed ID: 35567415
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The genomic landscape shaped by selection on transposable elements across 18 mouse strains.
    Nellåker C; Keane TM; Yalcin B; Wong K; Agam A; Belgard TG; Flint J; Adams DJ; Frankel WN; Ponting CP
    Genome Biol; 2012 Jun; 13(6):R45. PubMed ID: 22703977
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation.
    Ramakrishnan M; Satish L; Kalendar R; Narayanan M; Kandasamy S; Sharma A; Emamverdian A; Wei Q; Zhou M
    Int J Mol Sci; 2021 Oct; 22(21):. PubMed ID: 34768817
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Long-Read cDNA Sequencing Enables a "Gene-Like" Transcript Annotation of Transposable Elements.
    Panda K; Slotkin RK
    Plant Cell; 2020 Sep; 32(9):2687-2698. PubMed ID: 32647069
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Epigenetic tumor heterogeneity in the era of single-cell profiling with nanopore sequencing.
    Ahmed YW; Alemu BA; Bekele SA; Gizaw ST; Zerihun MF; Wabalo EK; Teklemariam MD; Mihrete TK; Hanurry EY; Amogne TG; Gebrehiwot AD; Berga TN; Haile EA; Edo DO; Alemu BD
    Clin Epigenetics; 2022 Aug; 14(1):107. PubMed ID: 36030244
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.