768 related articles for article (PubMed ID: 36475839)
1. Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing.
Tao Y; Xun F; Zhao C; Mao Z; Li B; Xing P; Wu QL
Microbiol Spectr; 2023 Feb; 11(1):e0332822. PubMed ID: 36475839
[TBL] [Abstract][Full Text] [Related]
2. Improved microbial genomes and gene catalog of the chicken gut from metagenomic sequencing of high-fidelity long reads.
Zhang Y; Jiang F; Yang B; Wang S; Wang H; Wang A; Xu D; Fan W
Gigascience; 2022 Nov; 11():. PubMed ID: 36399059
[TBL] [Abstract][Full Text] [Related]
3. Recovery of metagenome-assembled microbial genomes from a full-scale biogas plant of food waste by pacific biosciences high-fidelity sequencing.
Jiang F; Li Q; Wang S; Shen T; Wang H; Wang A; Xu D; Yuan L; Lei L; Chen R; Yang B; Deng Y; Fan W
Front Microbiol; 2022; 13():1095497. PubMed ID: 36699587
[TBL] [Abstract][Full Text] [Related]
4. Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces.
Cuscó A; Pérez D; Viñes J; Fàbregas N; Francino O
BMC Genomics; 2021 May; 22(1):330. PubMed ID: 33957869
[TBL] [Abstract][Full Text] [Related]
5. Comparing genomes recovered from time-series metagenomes using long- and short-read sequencing technologies.
Orellana LH; Krüger K; Sidhu C; Amann R
Microbiome; 2023 May; 11(1):105. PubMed ID: 37179340
[TBL] [Abstract][Full Text] [Related]
6. Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes.
Patin NV; Goodwin KD
mSystems; 2022 Dec; 7(6):e0059522. PubMed ID: 36448813
[TBL] [Abstract][Full Text] [Related]
7. HiFi metagenomic sequencing enables assembly of accurate and complete genomes from human gut microbiota.
Kim CY; Ma J; Lee I
Nat Commun; 2022 Oct; 13(1):6367. PubMed ID: 36289209
[TBL] [Abstract][Full Text] [Related]
8. Benchmarking genome assembly methods on metagenomic sequencing data.
Zhang Z; Yang C; Veldsman WP; Fang X; Zhang L
Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36917471
[TBL] [Abstract][Full Text] [Related]
9. Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data.
Gehrig JL; Portik DM; Driscoll MD; Jackson E; Chakraborty S; Gratalo D; Ashby M; Valladares R
Microb Genom; 2022 Mar; 8(3):. PubMed ID: 35302439
[TBL] [Abstract][Full Text] [Related]
10. Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples.
Zaragoza-Solas A; Haro-Moreno JM; Rodriguez-Valera F; López-Pérez M
mSystems; 2022 Jun; 7(3):e0019222. PubMed ID: 35695508
[TBL] [Abstract][Full Text] [Related]
11. Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
Somerville V; Lutz S; Schmid M; Frei D; Moser A; Irmler S; Frey JE; Ahrens CH
BMC Microbiol; 2019 Jun; 19(1):143. PubMed ID: 31238873
[TBL] [Abstract][Full Text] [Related]
12. High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method.
Liu L; Wang Y; Che Y; Chen Y; Xia Y; Luo R; Cheng SH; Zheng C; Zhang T
Microbiome; 2020 Nov; 8(1):155. PubMed ID: 33158461
[TBL] [Abstract][Full Text] [Related]
13. Terabase-Scale Coassembly of a Tropical Soil Microbiome.
Riley R; Bowers RM; Camargo AP; Campbell A; Egan R; Eloe-Fadrosh EA; Foster B; Hofmeyr S; Huntemann M; Kellom M; Kimbrel JA; Oliker L; Yelick K; Pett-Ridge J; Salamov A; Varghese NJ; Clum A
Microbiol Spectr; 2023 Aug; 11(4):e0020023. PubMed ID: 37310219
[TBL] [Abstract][Full Text] [Related]
14. MarkerMAG: linking metagenome-assembled genomes (MAGs) with 16S rRNA marker genes using paired-end short reads.
Song W; Zhang S; Thomas T
Bioinformatics; 2022 Aug; 38(15):3684-3688. PubMed ID: 35713513
[TBL] [Abstract][Full Text] [Related]
15. Long-Read-Resolved, Ecosystem-Wide Exploration of Nucleotide and Structural Microdiversity of Lake Bacterioplankton Genomes.
Okazaki Y; Nakano SI; Toyoda A; Tamaki H
mSystems; 2022 Aug; 7(4):e0043322. PubMed ID: 35938717
[TBL] [Abstract][Full Text] [Related]
16. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
17. Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing.
Singleton CM; Petriglieri F; Kristensen JM; Kirkegaard RH; Michaelsen TY; Andersen MH; Kondrotaite Z; Karst SM; Dueholm MS; Nielsen PH; Albertsen M
Nat Commun; 2021 Mar; 12(1):2009. PubMed ID: 33790294
[TBL] [Abstract][Full Text] [Related]
18. Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome-assembled genomes from a complex aquifer system.
Overholt WA; Hölzer M; Geesink P; Diezel C; Marz M; Küsel K
Environ Microbiol; 2020 Sep; 22(9):4000-4013. PubMed ID: 32761733
[TBL] [Abstract][Full Text] [Related]
19. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
20. Generation and application of pseudo-long reads for metagenome assembly.
Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
Gigascience; 2022 May; 11():. PubMed ID: 35579554
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]