BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 36478393)

  • 1. Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses.
    Keck F; Couton M; Altermatt F
    Mol Ecol Resour; 2023 May; 23(4):742-755. PubMed ID: 36478393
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Be positive: customized reference databases and new, local barcodes balance false taxonomic assignments in metabarcoding studies.
    Mugnai F; Costantini F; Chenuil A; Leduc M; Gutiérrez Ortega JM; Meglécz E
    PeerJ; 2023; 11():e14616. PubMed ID: 36643652
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb.
    Keck F; Altermatt F
    Mol Ecol Resour; 2023 Feb; 23(2):511-518. PubMed ID: 36239541
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding.
    Arranz V; Pearman WS; Aguirre JD; Liggins L
    Sci Data; 2020 Jul; 7(1):209. PubMed ID: 32620910
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Integrating eDNA metabarcoding and simultaneous underwater visual surveys to describe complex fish communities in a marine biodiversity hotspot.
    Valdivia-Carrillo T; Rocha-Olivares A; Reyes-Bonilla H; Domínguez-Contreras JF; Munguia-Vega A
    Mol Ecol Resour; 2021 Jul; 21(5):1558-1574. PubMed ID: 33683812
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem.
    Gold Z; Curd EE; Goodwin KD; Choi ES; Frable BW; Thompson AR; Walker HJ; Burton RS; Kacev D; Martz LD; Barber PH
    Mol Ecol Resour; 2021 Oct; 21(7):2546-2564. PubMed ID: 34235858
    [TBL] [Abstract][Full Text] [Related]  

  • 7. crabs-A software program to generate curated reference databases for metabarcoding sequencing data.
    Jeunen GJ; Dowle E; Edgecombe J; von Ammon U; Gemmell NJ; Cross H
    Mol Ecol Resour; 2023 Apr; 23(3):725-738. PubMed ID: 36437603
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Indigenous species barcode database improves the identification of zooplankton.
    Yang J; Zhang X; Zhang W; Sun J; Xie Y; Zhang Y; Burton GA; Yu H
    PLoS One; 2017; 12(10):e0185697. PubMed ID: 28977035
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Guidelines for the Analysis of DNA Barcoding/Metabarcoding Sequencing Data and Interpretation of Publicly Available Databases.
    Damaso N; Elwick KE; Robertson JM
    Methods Mol Biol; 2024; 2744():391-402. PubMed ID: 38683333
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Towards next-generation biodiversity assessment using DNA metabarcoding.
    Taberlet P; Coissac E; Pompanon F; Brochmann C; Willerslev E
    Mol Ecol; 2012 Apr; 21(8):2045-50. PubMed ID: 22486824
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies.
    Axtner J; Crampton-Platt A; Hörig LA; Mohamed A; Xu CCY; Yu DW; Wilting A
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30997489
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MetaZooGene Atlas and Database: Reference Sequences for Marine Ecosystems.
    O'Brien TD; Blanco-Bercial L; Questel JM; Batta-Lona PG; Bucklin A
    Methods Mol Biol; 2024; 2744():475-489. PubMed ID: 38683336
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Increased performance of DNA metabarcoding of macroinvertebrates by taxonomic sorting.
    Beentjes KK; Speksnijder AGCL; Schilthuizen M; Hoogeveen M; Pastoor R; van der Hoorn BB
    PLoS One; 2019; 14(12):e0226527. PubMed ID: 31841568
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods.
    Pawlowski J; Bruce K; Panksep K; Aguirre FI; Amalfitano S; Apothéloz-Perret-Gentil L; Baussant T; Bouchez A; Carugati L; Cermakova K; Cordier T; Corinaldesi C; Costa FO; Danovaro R; Dell'Anno A; Duarte S; Eisendle U; Ferrari BJD; Frontalini F; Frühe L; Haegerbaeumer A; Kisand V; Krolicka A; Lanzén A; Leese F; Lejzerowicz F; Lyautey E; Maček I; Sagova-Marečková M; Pearman JK; Pochon X; Stoeck T; Vivien R; Weigand A; Fazi S
    Sci Total Environ; 2022 Apr; 818():151783. PubMed ID: 34801504
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Strategies for sample labelling and library preparation in DNA metabarcoding studies.
    Bohmann K; Elbrecht V; Carøe C; Bista I; Leese F; Bunce M; Yu DW; Seymour M; Dumbrell AJ; Creer S
    Mol Ecol Resour; 2022 May; 22(4):1231-1246. PubMed ID: 34551203
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Curation of a reference database of COI sequences for insect identification through DNA metabarcoding: COins.
    Magoga G; Forni G; Brunetti M; Meral A; Spada A; De Biase A; Montagna M
    Database (Oxford); 2022 Jul; 2022():. PubMed ID: 35796594
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Just keep it simple? Benchmarking the accuracy of taxonomy assignment software in metabarcoding studies.
    Bik HM
    Mol Ecol Resour; 2021 Oct; 21(7):2187-2189. PubMed ID: 34268901
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparison of markers for the monitoring of freshwater benthic biodiversity through DNA metabarcoding.
    Ficetola GF; Boyer F; Valentini A; Bonin A; Meyer A; Dejean T; Gaboriaud C; Usseglio-Polatera P; Taberlet P
    Mol Ecol; 2021 Jul; 30(13):3189-3202. PubMed ID: 32920861
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Quantification of marine benthic communities with metabarcoding.
    Klunder L; van Bleijswijk JDL; Kleine Schaars L; van der Veer HW; Luttikhuizen PC; Bijleveld AI
    Mol Ecol Resour; 2022 Apr; 22(3):1043-1054. PubMed ID: 34687591
    [TBL] [Abstract][Full Text] [Related]  

  • 20. DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match.
    Deagle BE; Jarman SN; Coissac E; Pompanon F; Taberlet P
    Biol Lett; 2014 Sep; 10(9):. PubMed ID: 25209199
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.