BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

214 related articles for article (PubMed ID: 36518077)

  • 21. Protein Dynamics to Define and Refine Disordered Protein Ensembles.
    Naullage PM; Haghighatlari M; Namini A; Teixeira JMC; Li J; Zhang O; Gradinaru CC; Forman-Kay JD; Head-Gordon T
    J Phys Chem B; 2022 Mar; 126(9):1885-1894. PubMed ID: 35213160
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Generating Intrinsically Disordered Protein Conformational Ensembles from a Database of Ramachandran Space Pair Residue Probabilities Using a Markov Chain.
    Cukier RI
    J Phys Chem B; 2018 Oct; 122(39):9087-9101. PubMed ID: 30204435
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Structural Ensembles of Intrinsically Disordered Proteins Depend Strongly on Force Field: A Comparison to Experiment.
    Rauscher S; Gapsys V; Gajda MJ; Zweckstetter M; de Groot BL; Grubmüller H
    J Chem Theory Comput; 2015 Nov; 11(11):5513-24. PubMed ID: 26574339
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Conformational Ensemble of Disordered Proteins Probed by Solvent Paramagnetic Relaxation Enhancement (sPRE).
    Kooshapur H; Schwieters CD; Tjandra N
    Angew Chem Int Ed Engl; 2018 Oct; 57(41):13519-13522. PubMed ID: 30125451
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Intrinsically disordered protein-specific force field CHARMM36IDPSFF.
    Liu H; Song D; Lu H; Luo R; Chen HF
    Chem Biol Drug Des; 2018 Oct; 92(4):1722-1735. PubMed ID: 29808548
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A practical guide to small angle X-ray scattering (SAXS) of flexible and intrinsically disordered proteins.
    Kikhney AG; Svergun DI
    FEBS Lett; 2015 Sep; 589(19 Pt A):2570-7. PubMed ID: 26320411
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Predicting Conformational Properties of Intrinsically Disordered Proteins from Sequence.
    Ruff KM
    Methods Mol Biol; 2020; 2141():347-389. PubMed ID: 32696367
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Hydrodynamic Radii of Intrinsically Disordered Proteins Determined from Experimental Polyproline II Propensities.
    Tomasso ME; Tarver MJ; Devarajan D; Whitten ST
    PLoS Comput Biol; 2016 Jan; 12(1):e1004686. PubMed ID: 26727467
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Comment on the Optimal Parameters to Derive Intrinsically Disordered Protein Conformational Ensembles from Small-Angle X-ray Scattering Data Using the Ensemble Optimization Method.
    Sagar A; Jeffries CM; Petoukhov MV; Svergun DI; Bernadó P
    J Chem Theory Comput; 2021 Apr; 17(4):2014-2021. PubMed ID: 33725442
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Dimension conversion and scaling of disordered protein chains.
    Li M; Sun T; Jin F; Yu D; Liu Z
    Mol Biosyst; 2016 Aug; 12(9):2932-40. PubMed ID: 27440558
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Distance-Based Metrics for Comparing Conformational Ensembles of Intrinsically Disordered Proteins.
    Lazar T; Guharoy M; Vranken W; Rauscher S; Wodak SJ; Tompa P
    Biophys J; 2020 Jun; 118(12):2952-2965. PubMed ID: 32502383
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Development of Charge-Augmented Three-Point Water Model (CAIPi3P) for Accurate Simulations of Intrinsically Disordered Proteins.
    de Souza JV; Zariquiey FS; Bronowska AK
    Int J Mol Sci; 2020 Aug; 21(17):. PubMed ID: 32859072
    [TBL] [Abstract][Full Text] [Related]  

  • 33. pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.
    Varadi M; Kosol S; Lebrun P; Valentini E; Blackledge M; Dunker AK; Felli IC; Forman-Kay JD; Kriwacki RW; Pierattelli R; Sussman J; Svergun DI; Uversky VN; Vendruscolo M; Wishart D; Wright PE; Tompa P
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D326-35. PubMed ID: 24174539
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Hierarchical Ensembles of Intrinsically Disordered Proteins at Atomic Resolution in Molecular Dynamics Simulations.
    Pietrek LM; Stelzl LS; Hummer G
    J Chem Theory Comput; 2020 Jan; 16(1):725-737. PubMed ID: 31809054
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Low-resolution description of the conformational space for intrinsically disordered proteins.
    Förster D; Idier J; Liberti L; Mucherino A; Lin JH; Malliavin TE
    Sci Rep; 2022 Nov; 12(1):19057. PubMed ID: 36352011
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Structural and hydrodynamic properties of an intrinsically disordered region of a germ cell-specific protein on phase separation.
    Brady JP; Farber PJ; Sekhar A; Lin YH; Huang R; Bah A; Nott TJ; Chan HS; Baldwin AJ; Forman-Kay JD; Kay LE
    Proc Natl Acad Sci U S A; 2017 Sep; 114(39):E8194-E8203. PubMed ID: 28894006
    [TBL] [Abstract][Full Text] [Related]  

  • 37. An Adequate Account of Excluded Volume Is Necessary To Infer Compactness and Asphericity of Disordered Proteins by Förster Resonance Energy Transfer.
    Song J; Gomes GN; Gradinaru CC; Chan HS
    J Phys Chem B; 2015 Dec; 119(49):15191-202. PubMed ID: 26566073
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Small-Angle X-ray Scattering Signatures of Conformational Heterogeneity and Homogeneity of Disordered Protein Ensembles.
    Song J; Li J; Chan HS
    J Phys Chem B; 2021 Jun; 125(24):6451-6478. PubMed ID: 34115515
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Alanine and proline content modulate global sensitivity to discrete perturbations in disordered proteins.
    Perez RB; Tischer A; Auton M; Whitten ST
    Proteins; 2014 Dec; 82(12):3373-84. PubMed ID: 25244701
    [TBL] [Abstract][Full Text] [Related]  

  • 40. SAXS-Restrained Ensemble Simulations of Intrinsically Disordered Proteins with Commitment to the Principle of Maximum Entropy.
    Hermann MR; Hub JS
    J Chem Theory Comput; 2019 Sep; 15(9):5103-5115. PubMed ID: 31402649
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.