148 related articles for article (PubMed ID: 36536091)
1. Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing.
Begik O; Diensthuber G; Liu H; Delgado-Tejedor A; Kontur C; Niazi AM; Valen E; Giraldez AJ; Beaudoin JD; Mattick JS; Novoa EM
Nat Methods; 2023 Jan; 20(1):75-85. PubMed ID: 36536091
[TBL] [Abstract][Full Text] [Related]
2. Single-molecule polyadenylated tail sequencing (SM-PAT-Seq) to measure polyA tail lengths transcriptome-wide.
Coon SL; Li T; Iben JR; Mattijssen S; Maraia RJ
Methods Enzymol; 2021; 655():119-137. PubMed ID: 34183118
[TBL] [Abstract][Full Text] [Related]
3. Transcript Isoform-Specific Estimation of Poly(A) Tail Length by Nanopore Sequencing of Native RNA.
Niazi AM; Krause M; Valen E
Methods Mol Biol; 2021; 2284():543-567. PubMed ID: 33835463
[TBL] [Abstract][Full Text] [Related]
4. Single-Molecule Poly(A) Tail Sequencing (SM-PATseq) Using the PacBio Platform.
Iben JR; Li T; Mattijssen S; Maraia RJ
Methods Mol Biol; 2024; 2723():285-301. PubMed ID: 37824077
[TBL] [Abstract][Full Text] [Related]
5. Sequencing of Transcriptome-Wide Poly(A) Tails by PAIso-seq.
Liu Y; Lu F; Wang J
Methods Mol Biol; 2024; 2723():215-232. PubMed ID: 37824073
[TBL] [Abstract][Full Text] [Related]
6. TERA-Seq: true end-to-end sequencing of native RNA molecules for transcriptome characterization.
Ibrahim F; Oppelt J; Maragkakis M; Mourelatos Z
Nucleic Acids Res; 2021 Nov; 49(20):e115. PubMed ID: 34428294
[TBL] [Abstract][Full Text] [Related]
7. Genome-Wide Identification of Polyadenylation Dynamics with TED-Seq.
Kwak Y; Kwak H
Methods Mol Biol; 2022; 2404():281-298. PubMed ID: 34694615
[TBL] [Abstract][Full Text] [Related]
8. Alternative polyadenylation analysis in animals and plants: newly developed strategies for profiling, processing and validation.
Zhang Y; Carrion SA; Zhang Y; Zhang X; Zinski AL; Michal JJ; Jiang Z
Int J Biol Sci; 2018; 14(12):1709-1714. PubMed ID: 30416385
[TBL] [Abstract][Full Text] [Related]
9. Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation.
Routh A; Ji P; Jaworski E; Xia Z; Li W; Wagner EJ
Nucleic Acids Res; 2017 Jul; 45(12):e112. PubMed ID: 28449108
[TBL] [Abstract][Full Text] [Related]
10. Poly(a) selection introduces bias and undue noise in direct RNA-sequencing.
Viscardi MJ; Arribere JA
BMC Genomics; 2022 Jul; 23(1):530. PubMed ID: 35869428
[TBL] [Abstract][Full Text] [Related]
11.
Krause M; Niazi AM; Labun K; Torres Cleuren YN; Müller FS; Valen E
RNA; 2019 Oct; 25(10):1229-1241. PubMed ID: 31266821
[TBL] [Abstract][Full Text] [Related]
12. PolyAtailor: measuring poly(A) tail length from short-read and long-read sequencing data.
Liu M; Hao L; Yang S; Wu X
Brief Bioinform; 2022 Jul; 23(4):. PubMed ID: 35769001
[TBL] [Abstract][Full Text] [Related]
13. CLT-seq as a universal homopolymer-sequencing concept reveals poly(A)-tail-tuned ncRNA regulation.
Su Q; Long Y; Wang J; Gou D
Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37874949
[TBL] [Abstract][Full Text] [Related]
14. Poly(A)-seq: A method for direct sequencing and analysis of the transcriptomic poly(A)-tails.
Yu F; Zhang Y; Cheng C; Wang W; Zhou Z; Rang W; Yu H; Wei Y; Wu Q; Zhang Y
PLoS One; 2020; 15(6):e0234696. PubMed ID: 32544193
[TBL] [Abstract][Full Text] [Related]
15. FLAM-seq: full-length mRNA sequencing reveals principles of poly(A) tail length control.
Legnini I; Alles J; Karaiskos N; Ayoub S; Rajewsky N
Nat Methods; 2019 Sep; 16(9):879-886. PubMed ID: 31384046
[TBL] [Abstract][Full Text] [Related]
16. Transcriptome-wide measurement of poly(A) tail length and composition at subnanogram total RNA sensitivity by PAIso-seq.
Liu Y; Zhang Y; Wang J; Lu F
Nat Protoc; 2022 Sep; 17(9):1980-2007. PubMed ID: 35831615
[TBL] [Abstract][Full Text] [Related]
17. TED-Seq Identifies the Dynamics of Poly(A) Length during ER Stress.
Woo YM; Kwak Y; Namkoong S; Kristjánsdóttir K; Lee SH; Lee JH; Kwak H
Cell Rep; 2018 Sep; 24(13):3630-3641.e7. PubMed ID: 30257221
[TBL] [Abstract][Full Text] [Related]
18. Quantification of Poly(A) Tail Length and Terminal Modifications Using Direct RNA Sequencing.
Gupta A; Papas BN; Baptissart M; Morgan M
Methods Mol Biol; 2024; 2723():253-266. PubMed ID: 37824075
[TBL] [Abstract][Full Text] [Related]
19. RNA sequencing and quantitation using the Helicos Genetic Analysis System.
Raz T; Causey M; Jones DR; Kieu A; Letovsky S; Lipson D; Thayer E; Thompson JF; Milos PM
Methods Mol Biol; 2011; 733():37-49. PubMed ID: 21431761
[TBL] [Abstract][Full Text] [Related]
20. Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
Zhao W; He X; Hoadley KA; Parker JS; Hayes DN; Perou CM
BMC Genomics; 2014 Jun; 15(1):419. PubMed ID: 24888378
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]