184 related articles for article (PubMed ID: 36539202)
1. syntenet: an R/Bioconductor package for the inference and analysis of synteny networks.
Almeida-Silva F; Zhao T; Ullrich KK; Schranz ME; Van de Peer Y
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36539202
[TBL] [Abstract][Full Text] [Related]
2. SYNPHONI: scale-free and phylogeny-aware reconstruction of synteny conservation and transformation across animal genomes.
Robert NSM; Sarigol F; Zieger E; Simakov O
Bioinformatics; 2022 Dec; 38(24):5434-5436. PubMed ID: 36269177
[TBL] [Abstract][Full Text] [Related]
3. Whole-genome microsynteny-based phylogeny of angiosperms.
Zhao T; Zwaenepoel A; Xue JY; Kao SM; Li Z; Schranz ME; Van de Peer Y
Nat Commun; 2021 Jun; 12(1):3498. PubMed ID: 34108452
[TBL] [Abstract][Full Text] [Related]
4. Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants.
Gamboa-Tuz SD; Pereira-Santana A; Zhao T; Schranz ME
Methods Mol Biol; 2022; 2512():199-215. PubMed ID: 35818007
[TBL] [Abstract][Full Text] [Related]
5. microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization.
Cao Y; Dong Q; Wang D; Zhang P; Liu Y; Niu C
Bioinformatics; 2022 Aug; 38(16):4027-4029. PubMed ID: 35771644
[TBL] [Abstract][Full Text] [Related]
6. NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes.
He W; Yang J; Jing Y; Xu L; Yu K; Fang X
Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36883694
[TBL] [Abstract][Full Text] [Related]
7. Pan-evolutionary and regulatory genome architecture delineated by an integrated macro- and microsynteny approach.
Yu H; Li Y; Han W; Bao L; Liu F; Ma Y; Pu Z; Zeng Q; Zhang L; Bao Z; Wang S
Nat Protoc; 2024 Jun; 19(6):1623-1678. PubMed ID: 38514839
[TBL] [Abstract][Full Text] [Related]
8. monaLisa: an R/Bioconductor package for identifying regulatory motifs.
Machlab D; Burger L; Soneson C; Rijli FM; Schübeler D; Stadler MB
Bioinformatics; 2022 Apr; 38(9):2624-2625. PubMed ID: 35199152
[TBL] [Abstract][Full Text] [Related]
9. chimeraviz: a tool for visualizing chimeric RNA.
Lågstad S; Zhao S; Hoff AM; Johannessen B; Lingjærde OC; Skotheim RI
Bioinformatics; 2017 Sep; 33(18):2954-2956. PubMed ID: 28525538
[TBL] [Abstract][Full Text] [Related]
10. Plotgardener: cultivating precise multi-panel figures in R.
Kramer NE; Davis ES; Wenger CD; Deoudes EM; Parker SM; Love MI; Phanstiel DH
Bioinformatics; 2022 Mar; 38(7):2042-2045. PubMed ID: 35134826
[TBL] [Abstract][Full Text] [Related]
11. PATO: Pangenome Analysis Toolkit.
Fernández-de-Bobadilla MD; Talavera-Rodríguez A; Chacón L; Baquero F; Coque TM; Lanza VF
Bioinformatics; 2021 Dec; 37(23):4564-4566. PubMed ID: 34623430
[TBL] [Abstract][Full Text] [Related]
12. RCX-an R package adapting the Cytoscape Exchange format for biological networks.
Auer F; Kramer F
Bioinform Adv; 2022; 2(1):vbac020. PubMed ID: 36699420
[TBL] [Abstract][Full Text] [Related]
13. RCandy: an R package for visualizing homologous recombinations in bacterial genomes.
Chaguza C; Tonkin-Hill G; Lo SW; Hadfield J; Croucher NJ; Harris SR; Bentley SD
Bioinformatics; 2022 Feb; 38(5):1450-1451. PubMed ID: 34864895
[TBL] [Abstract][Full Text] [Related]
14. rGREAT: an R/bioconductor package for functional enrichment on genomic regions.
Gu Z; Hübschmann D
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36394265
[TBL] [Abstract][Full Text] [Related]
15. MorphoTools2: an R package for multivariate morphometric analysis.
Šlenker M; Koutecký P; Marhold K
Bioinformatics; 2022 May; 38(10):2954-2955. PubMed ID: 35561177
[TBL] [Abstract][Full Text] [Related]
16. Tree2GD: a phylogenomic method to detect large-scale gene duplication events.
Chen D; Zhang T; Chen Y; Ma H; Qi J
Bioinformatics; 2022 Nov; 38(23):5317-5321. PubMed ID: 36218394
[TBL] [Abstract][Full Text] [Related]
17. Synaptome.db: a bioconductor package for synaptic proteomics data.
Sorokina O; Sorokin A; Armstrong JD
Bioinform Adv; 2022; 2(1):vbac086. PubMed ID: 36699346
[TBL] [Abstract][Full Text] [Related]
18. UMI4Cats: an R package to analyze chromatin contact profiles obtained by UMI-4C.
Ramos-Rodríguez M; Subirana-Granés M; Pasquali L
Bioinformatics; 2021 Nov; 37(22):4240-4242. PubMed ID: 34009302
[TBL] [Abstract][Full Text] [Related]
19. ShinySyn: a Shiny/R application for the interactive visualization and integration of macro- and micro-synteny data.
Xiao Z; Lam HM
Bioinformatics; 2022 Sep; 38(18):4406-4408. PubMed ID: 35866686
[TBL] [Abstract][Full Text] [Related]
20. VeloViz: RNA velocity-informed embeddings for visualizing cellular trajectories.
Atta L; Sahoo A; Fan J
Bioinformatics; 2022 Jan; 38(2):391-396. PubMed ID: 34500455
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]