194 related articles for article (PubMed ID: 36553456)
1. A Multigraph-Based Representation of Hi-C Data.
Makai D; Cseh A; Sepsi A; Makai S
Genes (Basel); 2022 Nov; 13(12):. PubMed ID: 36553456
[TBL] [Abstract][Full Text] [Related]
2. 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs.
Ibn-Salem J; Andrade-Navarro MA
BMC Genomics; 2019 Oct; 20(1):777. PubMed ID: 31653198
[TBL] [Abstract][Full Text] [Related]
3. Advantages of using graph databases to explore chromatin conformation capture experiments.
D'Agostino D; Liò P; Aldinucci M; Merelli I
BMC Bioinformatics; 2021 Apr; 22(Suppl 2):43. PubMed ID: 33902433
[TBL] [Abstract][Full Text] [Related]
4. Practical Analysis of Genome Contact Interaction Experiments.
Carty MA; Elemento O
Methods Mol Biol; 2016; 1418():177-89. PubMed ID: 27008015
[TBL] [Abstract][Full Text] [Related]
5. ChromeBat: A Bio-Inspired Approach to 3D Genome Reconstruction.
Collins B; Oluwadare O; Brown P
Genes (Basel); 2021 Nov; 12(11):. PubMed ID: 34828363
[TBL] [Abstract][Full Text] [Related]
6. Assessing relationships between chromatin interactions and regulatory genomic activities using the self-organizing map.
Kunz T; Rieber L; Mahony S
Methods; 2021 May; 189():12-21. PubMed ID: 32652235
[TBL] [Abstract][Full Text] [Related]
7. DeepChIA-PET: Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks.
Liu T; Wang Z
PLoS Comput Biol; 2023 Jul; 19(7):e1011307. PubMed ID: 37440599
[TBL] [Abstract][Full Text] [Related]
8. Application of Hi-C technology in three-dimensional genomics research and disease pathogenesis analysis.
Wang SZ; Jiang F; Zhu DL; Yang TL; Guo Y
Yi Chuan; 2023 Apr; 45(4):279-294. PubMed ID: 37077163
[TBL] [Abstract][Full Text] [Related]
9. ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data.
Oluwadare O; Cheng J
BMC Bioinformatics; 2017 Nov; 18(1):480. PubMed ID: 29137603
[TBL] [Abstract][Full Text] [Related]
10. DNA methylation in transposable elements buffers the connection between three-dimensional chromatin organization and gene transcription upon rice genome duplication.
Sun Z; Wang Y; Song Z; Zhang H; Wang Y; Liu K; Ma M; Wang P; Fang Y; Cai D; Li G; Fang Y
J Adv Res; 2022 Dec; 42():41-53. PubMed ID: 35933090
[TBL] [Abstract][Full Text] [Related]
11. Integrative chromatin domain annotation through graph embedding of Hi-C data.
Shokraneh N; Arab M; Libbrecht M
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36534827
[TBL] [Abstract][Full Text] [Related]
12. Four-Dimensional Chromosome Structure Prediction.
Highsmith M; Cheng J
Int J Mol Sci; 2021 Sep; 22(18):. PubMed ID: 34575948
[TBL] [Abstract][Full Text] [Related]
13. A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data.
Huang L; Yang Y; Li G; Jiang M; Wen J; Abnousi A; Rosen JD; Hu M; Li Y
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35488276
[TBL] [Abstract][Full Text] [Related]
14. Genomics Methods for
Gilchrist MJ; Cho KWY; Veenstra GJC
Cold Spring Harb Protoc; 2020 May; 2020(5):097915. PubMed ID: 32123020
[TBL] [Abstract][Full Text] [Related]
15. Hi-C Analysis to Identify Genome-Wide Chromatin Structural Aberration in Cancer.
Okabe A; Kaneda A
Methods Mol Biol; 2023; 2519():127-140. PubMed ID: 36066718
[TBL] [Abstract][Full Text] [Related]
16. Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns.
Libbrecht MW; Chan RCW; Hoffman MM
PLoS Comput Biol; 2021 Oct; 17(10):e1009423. PubMed ID: 34648491
[TBL] [Abstract][Full Text] [Related]
17. Improving comparative analyses of Hi-C data via contrastive self-supervised learning.
Li H; He X; Kurowski L; Zhang R; Zhao D; Zeng J
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37287135
[TBL] [Abstract][Full Text] [Related]
18. Understanding 3D Genome Organization and Its Effect on Transcriptional Gene Regulation Under Environmental Stress in Plant: A Chromatin Perspective.
Kumar S; Kaur S; Seem K; Kumar S; Mohapatra T
Front Cell Dev Biol; 2021; 9():774719. PubMed ID: 34957106
[TBL] [Abstract][Full Text] [Related]
19. Deciphering Hi-C: from 3D genome to function.
Kong S; Zhang Y
Cell Biol Toxicol; 2019 Feb; 35(1):15-32. PubMed ID: 30610495
[TBL] [Abstract][Full Text] [Related]
20. DeCOOC Deconvoluted Hi-C Map Characterizes the Chromatin Architecture of Cells in Physiologically Distinctive Tissues.
Wang J; Lu L; Zheng S; Wang D; Jin L; Zhang Q; Li M; Zhang Z
Adv Sci (Weinh); 2023 Sep; 10(27):e2301058. PubMed ID: 37515382
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
