These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

217 related articles for article (PubMed ID: 36564405)

  • 1. Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals.
    Fedorova AD; Kiniry SJ; Andreev DE; Mudge JM; Baranov PV
    Nat Commun; 2022 Dec; 13(1):7910. PubMed ID: 36564405
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms.
    Michel AM; Ahern AM; Donohue CA; Baranov PV
    Proteomics; 2015 Jul; 15(14):2410-6. PubMed ID: 25736862
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Genome-wide identification of Arabidopsis non-AUG-initiated upstream ORFs with evolutionarily conserved regulatory sequences that control protein expression levels.
    Hiragori Y; Takahashi H; Karino T; Kaido A; Hayashi N; Sasaki S; Nakao K; Motomura T; Yamashita Y; Naito S; Onouchi H
    Plant Mol Biol; 2023 Jan; 111(1-2):37-55. PubMed ID: 36044152
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data.
    Spealman P; Naik AW; May GE; Kuersten S; Freeberg L; Murphy RF; McManus J
    Genome Res; 2018 Feb; 28(2):214-222. PubMed ID: 29254944
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data.
    Kiniry SJ; Judge CE; Michel AM; Baranov PV
    Nucleic Acids Res; 2021 Jul; 49(W1):W662-W670. PubMed ID: 33950201
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Translation initiation at AUG and non-AUG triplets in plants.
    Fang JC; Liu MJ
    Plant Sci; 2023 Oct; 335():111822. PubMed ID: 37574140
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Non-AUG start codons: Expanding and regulating the small and alternative ORFeome.
    Cao X; Slavoff SA
    Exp Cell Res; 2020 Jun; 391(1):111973. PubMed ID: 32209305
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria.
    Gelhausen R; Müller T; Svensson SL; Alkhnbashi OS; Sharma CM; Eggenhofer F; Backofen R
    Brief Bioinform; 2022 Mar; 23(2):. PubMed ID: 35037022
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Systematic analysis of the PTEN 5' leader identifies a major AUU initiated proteoform.
    Tzani I; Ivanov IP; Andreev DE; Dmitriev RI; Dean KA; Baranov PV; Atkins JF; Loughran G
    Open Biol; 2016 May; 6(5):. PubMed ID: 27249819
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Trips-Viz: a transcriptome browser for exploring Ribo-Seq data.
    Kiniry SJ; O'Connor PBF; Michel AM; Baranov PV
    Nucleic Acids Res; 2019 Jan; 47(D1):D847-D852. PubMed ID: 30239879
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Pervasive translation in
    Smith C; Canestrari JG; Wang AJ; Champion MM; Derbyshire KM; Gray TA; Wade JT
    Elife; 2022 Mar; 11():. PubMed ID: 35343439
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Rp3: Ribosome profiling-assisted proteogenomics improves coverage and confidence during microprotein discovery.
    Vieira de Souza E; L Bookout A; Barnes CA; Miller B; Machado P; Basso LA; Bizarro CV; Saghatelian A
    Nat Commun; 2024 Aug; 15(1):6839. PubMed ID: 39122697
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Non-AUG translation initiation in mammals.
    Andreev DE; Loughran G; Fedorova AD; Mikhaylova MS; Shatsky IN; Baranov PV
    Genome Biol; 2022 May; 23(1):111. PubMed ID: 35534899
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Translational regulation by uORFs and start codon selection stringency.
    Dever TE; Ivanov IP; Hinnebusch AG
    Genes Dev; 2023 Jun; 37(11-12):474-489. PubMed ID: 37433636
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genome-Wide Analysis of Actively Translated Open Reading Frames Using RiboTaper/ORFquant.
    Harnett D; Meerdink E; Calviello L; Sydow D; Ohler U
    Methods Mol Biol; 2021; 2252():331-346. PubMed ID: 33765284
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Translation of small downstream ORFs enhances translation of canonical main open reading frames.
    Wu Q; Wright M; Gogol MM; Bradford WD; Zhang N; Bazzini AA
    EMBO J; 2020 Sep; 39(17):e104763. PubMed ID: 32744758
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ribosomal profiling adds new coding sequences to the proteome.
    Mumtaz MA; Couso JP
    Biochem Soc Trans; 2015 Dec; 43(6):1271-6. PubMed ID: 26614672
    [TBL] [Abstract][Full Text] [Related]  

  • 18. What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?
    Prensner JR; Abelin JG; Kok LW; Clauser KR; Mudge JM; Ruiz-Orera J; Bassani-Sternberg M; Moritz RL; Deutsch EW; van Heesch S
    Mol Cell Proteomics; 2023 Sep; 22(9):100631. PubMed ID: 37572790
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Proteins à la carte: riboproteogenomic exploration of bacterial N-terminal proteoform expression.
    Fijalkowski I; Snauwaert V; Van Damme P
    mBio; 2024 Apr; 15(4):e0033324. PubMed ID: 38511928
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Long non-coding RNAs as a source of new peptides.
    Ruiz-Orera J; Messeguer X; Subirana JA; Alba MM
    Elife; 2014 Sep; 3():e03523. PubMed ID: 25233276
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.