These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

125 related articles for article (PubMed ID: 36566382)

  • 1. Executing cell-specific cross-linking immunoprecipitation and sequencing (seCLIP) in C. elegans.
    Blazie SM; Jin Y
    STAR Protoc; 2023 Mar; 4(1):101959. PubMed ID: 36566382
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq.
    Blue SM; Yee BA; Pratt GA; Mueller JR; Park SS; Shishkin AA; Starner AC; Van Nostrand EL; Yeo GW
    Nat Protoc; 2022 May; 17(5):1223-1265. PubMed ID: 35322209
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).
    Van Nostrand EL; Nguyen TB; Gelboin-Burkhart C; Wang R; Blue SM; Pratt GA; Louie AL; Yeo GW
    Methods Mol Biol; 2017; 1648():177-200. PubMed ID: 28766298
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Global Run-On sequencing to measure nascent transcription in
    Quarato P; Cecere G
    STAR Protoc; 2021 Dec; 2(4):100991. PubMed ID: 34927098
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A Pipeline for Analyzing eCLIP and iCLIP Data with Htseq-clip and DEWSeq.
    Sahadevan S; Sekaran T; Schwarzl T
    Methods Mol Biol; 2022; 2404():189-205. PubMed ID: 34694610
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
    Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
    J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
    Benhalevy D; McFarland HL; Sarshad AA; Hafner M
    Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
    [TBL] [Abstract][Full Text] [Related]  

  • 8. In vivo and transcriptome-wide identification of RNA binding protein target sites.
    Jungkamp AC; Stoeckius M; Mecenas D; Grün D; Mastrobuoni G; Kempa S; Rajewsky N
    Mol Cell; 2011 Dec; 44(5):828-40. PubMed ID: 22152485
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Spatial transcriptomics of the nematode
    Schild ES; Mars J; Ebbing A; Vivié J; Betist M; Korswagen HC
    STAR Protoc; 2021 Jun; 2(2):100411. PubMed ID: 33870220
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CRIC-seq protocol for in situ profiling of proximal RNA-RNA contacts associated with RNA-binding proteins.
    Ye R; Hu N; Xue Y
    STAR Protoc; 2023 Sep; 4(3):102401. PubMed ID: 37405924
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mapping protein-RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2).
    Lewinski M; Brüggemann M; Köster T; Reichel M; Bergelt T; Meyer K; König J; Zarnack K; Staiger D
    Nat Protoc; 2024 Apr; 19(4):1183-1234. PubMed ID: 38278964
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Denaturing cross-linking immunoprecipitation to identify footprints for RNA-binding proteins.
    Rosenberg M; Levy V; Maier VK; Kesner B; Blum R; Lee JT
    STAR Protoc; 2021 Dec; 2(4):100819. PubMed ID: 34585157
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
    Li Q; Uemura Y; Kawahara Y
    Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Deconvolution of in vivo protein-RNA contacts using fractionated eCLIP-seq.
    Biancon G; Busarello E; Joshi P; Lesch BJ; Halene S; Tebaldi T
    STAR Protoc; 2022 Dec; 3(4):101823. PubMed ID: 36595959
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptome-wide identification of binding sites of RNA-binding proteins.
    Spitzer J; Hafner M; Landthaler M; Ascano M; Farazi T; Wardle G; Nusbaum J; Khorshid M; Burger L; Zavolan M; Tuschl T
    Methods Enzymol; 2014; 539():113-61. PubMed ID: 24581442
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans.
    Brdlik CM; Niu W; Snyder M
    Methods Enzymol; 2014; 539():89-111. PubMed ID: 24581441
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A quantitative RNA code for mRNA target selection by the germline fate determinant GLD-1.
    Wright JE; Gaidatzis D; Senften M; Farley BM; Westhof E; Ryder SP; Ciosk R
    EMBO J; 2011 Feb; 30(3):533-45. PubMed ID: 21169991
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identifying Argonaute binding sites in Caenorhabditis elegans using iCLIP.
    Broughton JP; Pasquinelli AE
    Methods; 2013 Sep; 63(2):119-25. PubMed ID: 23583680
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DO-RIP-seq to quantify RNA binding sites transcriptome-wide.
    Nicholson CO; Friedersdorf MB; Bisogno LS; Keene JD
    Methods; 2017 Apr; 118-119():16-23. PubMed ID: 27840290
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
    Danan C; Manickavel S; Hafner M
    Methods Mol Biol; 2016; 1358():153-73. PubMed ID: 26463383
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.