These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
189 related articles for article (PubMed ID: 36574037)
1. DeepBSRPred: deep learning-based binding site residue prediction for proteins. Nikam R; Yugandhar K; Gromiha MM Amino Acids; 2023 Oct; 55(10):1305-1316. PubMed ID: 36574037 [TBL] [Abstract][Full Text] [Related]
2. Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes. Nikam R; Yugandhar K; Gromiha MM Biochim Biophys Acta Proteins Proteom; 2023 Nov; 1871(6):140948. PubMed ID: 37567456 [TBL] [Abstract][Full Text] [Related]
3. DeepPPAPredMut: deep ensemble method for predicting the binding affinity change in protein-protein complexes upon mutation. Nikam R; Jemimah S; Gromiha MM Bioinformatics; 2024 May; 40(5):. PubMed ID: 38718170 [TBL] [Abstract][Full Text] [Related]
4. DELPHI: accurate deep ensemble model for protein interaction sites prediction. Li Y; Golding GB; Ilie L Bioinformatics; 2021 May; 37(7):896-904. PubMed ID: 32840562 [TBL] [Abstract][Full Text] [Related]
5. A deep learning-based method for the prediction of DNA interacting residues in a protein. Patiyal S; Dhall A; Raghava GPS Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35943134 [TBL] [Abstract][Full Text] [Related]
7. Improved protein relative solvent accessibility prediction using deep multi-view feature learning framework. Fan XQ; Hu J; Jia NX; Yu DJ; Zhang GJ Anal Biochem; 2021 Oct; 631():114358. PubMed ID: 34478704 [TBL] [Abstract][Full Text] [Related]
8. MUFOLD-SS: New deep inception-inside-inception networks for protein secondary structure prediction. Fang C; Shang Y; Xu D Proteins; 2018 May; 86(5):592-598. PubMed ID: 29492997 [TBL] [Abstract][Full Text] [Related]
9. MutBLESS: A tool to identify disease-prone sites in cancer using deep learning. Pandey M; Gromiha MM Biochim Biophys Acta Mol Basis Dis; 2023 Aug; 1869(6):166721. PubMed ID: 37105446 [TBL] [Abstract][Full Text] [Related]
10. PCA-MutPred: Prediction of Binding Free Energy Change Upon Missense Mutation in Protein-carbohydrate Complexes. Siva Shanmugam NR; Veluraja K; Michael Gromiha M J Mol Biol; 2022 Jun; 434(11):167526. PubMed ID: 35662456 [TBL] [Abstract][Full Text] [Related]
11. APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility. Xia JF; Zhao XM; Song J; Huang DS BMC Bioinformatics; 2010 Apr; 11():174. PubMed ID: 20377884 [TBL] [Abstract][Full Text] [Related]
12. Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art. Walia RR; Caragea C; Lewis BA; Towfic F; Terribilini M; El-Manzalawy Y; Dobbs D; Honavar V BMC Bioinformatics; 2012 May; 13():89. PubMed ID: 22574904 [TBL] [Abstract][Full Text] [Related]
13. EvoRator2: Predicting Site-specific Amino Acid Substitutions Based on Protein Structural Information Using Deep Learning. Nagar N; Tubiana J; Loewenthal G; Wolfson HJ; Ben Tal N; Pupko T J Mol Biol; 2023 Jul; 435(14):168155. PubMed ID: 37356902 [TBL] [Abstract][Full Text] [Related]
14. DeepCys: Structure-based multiple cysteine function prediction method trained on deep neural network: Case study on domains of unknown functions belonging to COX2 domains. Nallapareddy V; Bogam S; Devarakonda H; Paliwal S; Bandyopadhyay D Proteins; 2021 Jul; 89(7):745-761. PubMed ID: 33580578 [TBL] [Abstract][Full Text] [Related]
15. DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins. Tan KP; Varadarajan R; Madhusudhan MS Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W242-8. PubMed ID: 21576233 [TBL] [Abstract][Full Text] [Related]
16. circRNA-binding protein site prediction based on multi-view deep learning, subspace learning and multi-view classifier. Li H; Deng Z; Yang H; Pan X; Wei Z; Shen HB; Choi KS; Wang L; Wang S; Wu J Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34571539 [TBL] [Abstract][Full Text] [Related]
17. Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction. Han Y; Kim D BMC Bioinformatics; 2017 Dec; 18(1):585. PubMed ID: 29281985 [TBL] [Abstract][Full Text] [Related]
18. PDA-Pred: Predicting the binding affinity of protein-DNA complexes using machine learning techniques and structural features. Harini K; Kihara D; Michael Gromiha M Methods; 2023 May; 213():10-17. PubMed ID: 36924867 [TBL] [Abstract][Full Text] [Related]
19. ScanNet: A Web Server for Structure-based Prediction of Protein Binding Sites with Geometric Deep Learning. Tubiana J; Schneidman-Duhovny D; Wolfson HJ J Mol Biol; 2022 Oct; 434(19):167758. PubMed ID: 36116806 [TBL] [Abstract][Full Text] [Related]
20. Combination of deep neural network with attention mechanism enhances the explainability of protein contact prediction. Chen C; Wu T; Guo Z; Cheng J Proteins; 2021 Jun; 89(6):697-707. PubMed ID: 33538038 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]