165 related articles for article (PubMed ID: 36629453)
1. ABSP: an automated R tool to efficiently analyze region-specific CpG methylation from bisulfite sequencing PCR.
Denoulet M; Brulé M; Anquez F; Vincent A; Schnipper J; Adriaenssens E; Toillon RA; Le Bourhis X; Lagadec C
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36629453
[TBL] [Abstract][Full Text] [Related]
2. Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers.
Pabinger S; Ernst K; Pulverer W; Kallmeyer R; Valdes AM; Metrustry S; Katic D; Nuzzo A; Kriegner A; Vierlinger K; Weinhaeusel A
PLoS One; 2016; 11(7):e0160227. PubMed ID: 27467908
[TBL] [Abstract][Full Text] [Related]
3. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
[TBL] [Abstract][Full Text] [Related]
4. Comparison of bisulfite sequencing PCR with pyrosequencing for measuring differences in DNA methylation.
Reed K; Poulin ML; Yan L; Parissenti AM
Anal Biochem; 2010 Feb; 397(1):96-106. PubMed ID: 19835834
[TBL] [Abstract][Full Text] [Related]
5. BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences.
Rohde C; Zhang Y; Reinhardt R; Jeltsch A
BMC Bioinformatics; 2010 May; 11():230. PubMed ID: 20459626
[TBL] [Abstract][Full Text] [Related]
6. Region of interest methylation analysis: a comparison of MSP with MS-HRM and direct BSP.
Akika R; Awada Z; Mogharbil N; Zgheib NK
Mol Biol Rep; 2017 Jul; 44(3):295-305. PubMed ID: 28676996
[TBL] [Abstract][Full Text] [Related]
7. DMEAS: DNA methylation entropy analysis software.
He J; Sun X; Shao X; Liang L; Xie H
Bioinformatics; 2013 Aug; 29(16):2044-5. PubMed ID: 23749987
[TBL] [Abstract][Full Text] [Related]
8. Efficiently quantifying DNA methylation for bulk- and single-cell bisulfite data.
Fischer J; Schulz MH
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37326968
[TBL] [Abstract][Full Text] [Related]
9. BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data.
Hu K; Ting AH; Li J
BMC Bioinformatics; 2015 Jul; 16():220. PubMed ID: 26163275
[TBL] [Abstract][Full Text] [Related]
10. BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.
Bock C; Reither S; Mikeska T; Paulsen M; Walter J; Lengauer T
Bioinformatics; 2005 Nov; 21(21):4067-8. PubMed ID: 16141249
[TBL] [Abstract][Full Text] [Related]
11. Rapid quantification of DNA methylation by measuring relative peak heights in direct bisulfite-PCR sequencing traces.
Jiang M; Zhang Y; Fei J; Chang X; Fan W; Qian X; Zhang T; Lu D
Lab Invest; 2010 Feb; 90(2):282-90. PubMed ID: 20010852
[TBL] [Abstract][Full Text] [Related]
12. Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-time bisulfite sequencing (SMRT-BS).
Yang Y; Sebra R; Pullman BS; Qiao W; Peter I; Desnick RJ; Geyer CR; DeCoteau JF; Scott SA
BMC Genomics; 2015 May; 16(1):350. PubMed ID: 25943404
[TBL] [Abstract][Full Text] [Related]
13. CpG PatternFinder: a Windows-based utility program for easy and rapid identification of the CpG methylation status of DNA.
Xu YH; Manoharan HT; Pitot HC
Biotechniques; 2007 Sep; 43(3):334, 336-40, 342. PubMed ID: 17907576
[TBL] [Abstract][Full Text] [Related]
14. MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment.
Sun S; Noviski A; Yu X
BMC Bioinformatics; 2013 Aug; 14():259. PubMed ID: 23968174
[TBL] [Abstract][Full Text] [Related]
15. Investigation of genomic methylation status using methylation-specific and bisulfite sequencing polymerase chain reaction.
Carless MA
Methods Mol Biol; 2015; 1288():193-212. PubMed ID: 25827881
[TBL] [Abstract][Full Text] [Related]
16. B-SOLANA: an approach for the analysis of two-base encoding bisulfite sequencing data.
Kreck B; Marnellos G; Richter J; Krueger F; Siebert R; Franke A
Bioinformatics; 2012 Feb; 28(3):428-9. PubMed ID: 22155865
[TBL] [Abstract][Full Text] [Related]
17. Quantitative Analysis of DNA Methylation by Bisulfite Sequencing.
Ashapkin VV; Kutueva LI; Vanyushin BF
Methods Mol Biol; 2020; 2138():297-312. PubMed ID: 32219758
[TBL] [Abstract][Full Text] [Related]
18. MethPrimer: designing primers for methylation PCRs.
Li LC; Dahiya R
Bioinformatics; 2002 Nov; 18(11):1427-31. PubMed ID: 12424112
[TBL] [Abstract][Full Text] [Related]
19. A trimming-and-retrieving alignment scheme for reduced representation bisulfite sequencing.
Wang X; Yu X; Zhu W; McCombie WR; Antoniou E; Powers RS; Davidson NO; Li E; Williams J
Bioinformatics; 2015 Jun; 31(12):2040-2. PubMed ID: 25681254
[TBL] [Abstract][Full Text] [Related]
20. Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data.
Graña O; López-Fernández H; Fdez-Riverola F; González Pisano D; Glez-Peña D
Bioinformatics; 2018 Apr; 34(8):1414-1415. PubMed ID: 29211825
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]