162 related articles for article (PubMed ID: 36637157)
1. Histological E-data Registration in rodent Brain Spaces.
Fuglstad JG; Saldanha P; Paglia J; Whitlock JR
Elife; 2023 Jan; 12():. PubMed ID: 36637157
[TBL] [Abstract][Full Text] [Related]
2. 3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas.
Schubert N; Axer M; Schober M; Huynh AM; Huysegoms M; Palomero-Gallagher N; Bjaalie JG; Leergaard TB; Kirlangic ME; Amunts K; Zilles K
Front Neuroanat; 2016; 10():51. PubMed ID: 27199682
[TBL] [Abstract][Full Text] [Related]
3. Constructing and optimizing 3D atlases from 2D data with application to the developing mouse brain.
Young DM; Fazel Darbandi S; Schwartz G; Bonzell Z; Yuruk D; Nojima M; Gole LC; Rubenstein JL; Yu W; Sanders SJ
Elife; 2021 Feb; 10():. PubMed ID: 33570495
[TBL] [Abstract][Full Text] [Related]
4. Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion tensor magnetic resonance imaging.
Osen KK; Imad J; Wennberg AE; Papp EA; Leergaard TB
Neuroimage; 2019 Oct; 199():38-56. PubMed ID: 31100433
[TBL] [Abstract][Full Text] [Related]
5. Anatomical landmarks for registration of experimental image data to volumetric rodent brain atlasing templates.
Sergejeva M; Papp EA; Bakker R; Gaudnek MA; Okamura-Oho Y; Boline J; Bjaalie JG; Hess A
J Neurosci Methods; 2015 Jan; 240():161-9. PubMed ID: 25445058
[TBL] [Abstract][Full Text] [Related]
6. Localization and Registration of 2D Histological Mouse Brain Images in 3D Atlas Space.
Sadeghi M; Ramos-Prats A; Neto P; Castaldi F; Crowley D; Matulewicz P; Paradiso E; Freysinger W; Ferraguti F; Goebel G
Neuroinformatics; 2023 Jul; 21(3):615-630. PubMed ID: 37357231
[TBL] [Abstract][Full Text] [Related]
7. Waxholm Space atlas of the Sprague Dawley rat brain.
Papp EA; Leergaard TB; Calabrese E; Johnson GA; Bjaalie JG
Neuroimage; 2014 Aug; 97():374-86. PubMed ID: 24726336
[TBL] [Abstract][Full Text] [Related]
8. A Semi-Automated Workflow for Brain Slice Histology Alignment, Registration, and Cell Quantification (SHARCQ).
Lauridsen K; Ly A; Prévost ED; McNulty C; McGovern DJ; Tay JW; Dragavon J; Root DH
eNeuro; 2022; 9(2):. PubMed ID: 35396257
[TBL] [Abstract][Full Text] [Related]
9. Waxholm Space atlas of the rat brain hippocampal region: three-dimensional delineations based on magnetic resonance and diffusion tensor imaging.
Kjonigsen LJ; Lillehaug S; Bjaalie JG; Witter MP; Leergaard TB
Neuroimage; 2015 Mar; 108():441-9. PubMed ID: 25585022
[TBL] [Abstract][Full Text] [Related]
10. Cyberinfrastructure for the digital brain: spatial standards for integrating rodent brain atlases.
Zaslavsky I; Baldock RA; Boline J
Front Neuroinform; 2014; 8():74. PubMed ID: 25309417
[TBL] [Abstract][Full Text] [Related]
11. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
12. FASTMAP: Open-Source Flexible Atlas Segmentation Tool for Multi-Area Processing of Biological Images.
Terstege DJ; Oboh DO; Epp JR
eNeuro; 2022; 9(2):. PubMed ID: 35228311
[TBL] [Abstract][Full Text] [Related]
13. The creation of a brain atlas for image guided neurosurgery using serial histological data.
Chakravarty MM; Bertrand G; Hodge CP; Sadikot AF; Collins DL
Neuroimage; 2006 Apr; 30(2):359-76. PubMed ID: 16406816
[TBL] [Abstract][Full Text] [Related]
14. A dynamic and expandable digital 3D-atlas maker for monitoring the temporal changes in tissue growth during hindbrain morphogenesis.
Blanc M; Dalmasso G; Udina F; Pujades C
Elife; 2022 Sep; 11():. PubMed ID: 36169400
[TBL] [Abstract][Full Text] [Related]
15. Recording human electrocorticographic (ECoG) signals for neuroscientific research and real-time functional cortical mapping.
Hill NJ; Gupta D; Brunner P; Gunduz A; Adamo MA; Ritaccio A; Schalk G
J Vis Exp; 2012 Jun; (64):. PubMed ID: 22782131
[TBL] [Abstract][Full Text] [Related]
16. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain.
Yates SC; Groeneboom NE; Coello C; Lichtenthaler SF; Kuhn PH; Demuth HU; Hartlage-Rübsamen M; Roßner S; Leergaard T; Kreshuk A; Puchades MA; Bjaalie JG
Front Neuroinform; 2019; 13():75. PubMed ID: 31849633
[TBL] [Abstract][Full Text] [Related]
17. Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images.
Groeneboom NE; Yates SC; Puchades MA; Bjaalie JG
Front Neuroinform; 2020; 14():37. PubMed ID: 32973479
[TBL] [Abstract][Full Text] [Related]
18. AtlasGuide: software for stereotaxic guidance using 3D CT/MRI hybrid atlases of developing mouse brains.
Li X; Aggarwal M; Hsu J; Jiang H; Mori S
J Neurosci Methods; 2013 Oct; 220(1):75-84. PubMed ID: 23994359
[TBL] [Abstract][Full Text] [Related]
19. Connecting imaging mass spectrometry and magnetic resonance imaging-based anatomical atlases for automated anatomical interpretation and differential analysis.
Verbeeck N; Spraggins JM; Murphy MJM; Wang HD; Deutch AY; Caprioli RM; Van de Plas R
Biochim Biophys Acta Proteins Proteom; 2017 Jul; 1865(7):967-977. PubMed ID: 28254588
[TBL] [Abstract][Full Text] [Related]
20. Whole-Brain Image Analysis and Anatomical Atlas 3D Generation Using MagellanMapper.
Young DM; Duhn C; Gilson M; Nojima M; Yuruk D; Kumar A; Yu W; Sanders SJ
Curr Protoc Neurosci; 2020 Dec; 94(1):e104. PubMed ID: 32981139
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
