These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 36637197)

  • 1. Mapache: a flexible pipeline to map ancient DNA.
    Neuenschwander S; Cruz Dávalos DI; Anchieri L; Sousa da Mota B; Bozzi D; Rubinacci S; Delaneau O; Rasmussen S; Malaspinas AS
    Bioinformatics; 2023 Feb; 39(2):. PubMed ID: 36637197
    [TBL] [Abstract][Full Text] [Related]  

  • 2. TransFlow: a Snakemake workflow for transmission analysis of Mycobacterium tuberculosis whole-genome sequencing data.
    Pan J; Li X; Zhang M; Lu Y; Zhu Y; Wu K; Wu Y; Wang W; Chen B; Liu Z; Wang X; Gao J
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36469333
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species.
    Kutschera VE; Kierczak M; van der Valk T; von Seth J; Dussex N; Lord E; Dehasque M; Stanton DWG; Khoonsari PE; Nystedt B; Dalén L; Díez-Del-Molino D
    BMC Bioinformatics; 2022 Jun; 23(1):228. PubMed ID: 35698034
    [TBL] [Abstract][Full Text] [Related]  

  • 4. mapDATAge: a ShinyR package to chart ancient DNA data through space and time.
    Liu X; Orlando L
    Bioinformatics; 2022 Aug; 38(16):3992-3994. PubMed ID: 35771611
    [TBL] [Abstract][Full Text] [Related]  

  • 5. grenepipe: a flexible, scalable and reproducible pipeline to automate variant calling from sequence reads.
    Czech L; Exposito-Alonso M
    Bioinformatics; 2022 Oct; 38(20):4809-4811. PubMed ID: 36053180
    [TBL] [Abstract][Full Text] [Related]  

  • 6. kGWASflow: a modular, flexible, and reproducible Snakemake workflow for k-mers-based GWAS.
    Corut AK; Wallace JG
    G3 (Bethesda); 2023 Dec; 14(1):. PubMed ID: 37976215
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MetaSanity: an integrated microbial genome evaluation and annotation pipeline.
    Neely CJ; Graham ED; Tully BJ
    Bioinformatics; 2020 Aug; 36(15):4341-4344. PubMed ID: 32426808
    [TBL] [Abstract][Full Text] [Related]  

  • 8. STAAR workflow: a cloud-based workflow for scalable and reproducible rare variant analysis.
    Gaynor SM; Westerman KE; Ackovic LL; Li X; Li Z; Manning AK; Philippakis A; Lin X
    Bioinformatics; 2022 May; 38(11):3116-3117. PubMed ID: 35441669
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Tibanna: software for scalable execution of portable pipelines on the cloud.
    Lee S; Johnson J; Vitzthum C; Kırlı K; Alver BH; Park PJ
    Bioinformatics; 2019 Nov; 35(21):4424-4426. PubMed ID: 31077294
    [TBL] [Abstract][Full Text] [Related]  

  • 10. DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.
    Tanizawa Y; Fujisawa T; Nakamura Y
    Bioinformatics; 2018 Mar; 34(6):1037-1039. PubMed ID: 29106469
    [TBL] [Abstract][Full Text] [Related]  

  • 11. riboCleaner: a pipeline to identify and quantify rRNA read contamination from RNA-seq data in plants.
    Huang P; Davis E; Cao X; Cameron HJ
    Bioinformatics; 2022 Aug; 38(15):3840-3843. PubMed ID: 35731209
    [TBL] [Abstract][Full Text] [Related]  

  • 12. bollito: a flexible pipeline for comprehensive single-cell RNA-seq analyses.
    García-Jimeno L; Fustero-Torre C; Jiménez-Santos MJ; Gómez-López G; Di Domenico T; Al-Shahrour F
    Bioinformatics; 2022 Jan; 38(4):1155-1156. PubMed ID: 34788788
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SnakeWRAP: a Snakemake workflow to facilitate automated processing of metagenomic data through the metaWRAP pipeline.
    Krapohl J; Pickett BE
    F1000Res; 2022; 11():265. PubMed ID: 37469625
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MosaiCatcher v2: a single-cell structural variations detection and analysis reference framework based on Strand-seq.
    Weber T; Cosenza MR; Korbel J
    Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37851409
    [TBL] [Abstract][Full Text] [Related]  

  • 15.
    Gregoricchio S; Zwart W
    Bioinform Adv; 2023; 3(1):vbad080. PubMed ID: 37397353
    [TBL] [Abstract][Full Text] [Related]  

  • 16. VGEA: an RNA viral assembly toolkit.
    Oluniyi PE; Ajogbasile F; Oguzie J; Uwanibe J; Kayode A; Happi A; Ugwu A; Olumade T; Ogunsanya O; Eromon PE; Folarin O; Frost SDW; Heeney J; Happi CT
    PeerJ; 2021; 9():e12129. PubMed ID: 34567846
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PyMethylProcess-convenient high-throughput preprocessing workflow for DNA methylation data.
    Levy JJ; Titus AJ; Salas LA; Christensen BC
    Bioinformatics; 2019 Dec; 35(24):5379-5381. PubMed ID: 31368477
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
    Kieser S; Brown J; Zdobnov EM; Trajkovski M; McCue LA
    BMC Bioinformatics; 2020 Jun; 21(1):257. PubMed ID: 32571209
    [TBL] [Abstract][Full Text] [Related]  

  • 19. HaploTypo: a variant-calling pipeline for phased genomes.
    Pegueroles C; Mixão V; Carreté L; Molina M; Gabaldón T
    Bioinformatics; 2020 Apr; 36(8):2569-2571. PubMed ID: 31834373
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An automated workflow for parallel processing of large multiview SPIM recordings.
    Schmied C; Steinbach P; Pietzsch T; Preibisch S; Tomancak P
    Bioinformatics; 2016 Apr; 32(7):1112-4. PubMed ID: 26628585
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.