BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

141 related articles for article (PubMed ID: 36655761)

  • 1. FungiExp: a user-friendly database and analysis platform for exploring fungal gene expression and alternative splicing.
    Liu J; Zhang Y; Shi Y; Zheng Y; Zhu Y; Guan Z; Shen D; Dou D
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36655761
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A web-based database server using 43,710 public RNA-seq samples for the analysis of gene expression and alternative splicing in livestock animals.
    Liu J; Lang K; Tan S; Jie W; Zhu Y; Huang S; Huang W
    BMC Genomics; 2022 Oct; 23(1):706. PubMed ID: 36253723
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MetazExp: a database for gene expression and alternative splicing profiles and their analyses based on 53 615 public RNA-seq samples in 72 metazoan species.
    Liu J; Yin F; Lang K; Jie W; Tan S; Duan R; Huang S; Huang W
    Nucleic Acids Res; 2022 Jan; 50(D1):D1046-D1054. PubMed ID: 34718719
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PlantExp: a platform for exploration of gene expression and alternative splicing based on public plant RNA-seq samples.
    Liu J; Zhang Y; Zheng Y; Zhu Y; Shi Y; Guan Z; Lang K; Shen D; Huang W; Dou D
    Nucleic Acids Res; 2023 Jan; 51(D1):D1483-D1491. PubMed ID: 36271793
    [TBL] [Abstract][Full Text] [Related]  

  • 5. FishExp: A comprehensive database and analysis platform for gene expression and alternative splicing of fish species.
    Tan S; Wang W; Jie W; Liu J
    Comput Struct Biotechnol J; 2022; 20():3676-3684. PubMed ID: 35891795
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNAseqViewer: visualization tool for RNA-Seq data.
    Rogé X; Zhang X
    Bioinformatics; 2014 Mar; 30(6):891-2. PubMed ID: 24215023
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
    Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
    Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs.
    LeGault LH; Dewey CN
    Bioinformatics; 2013 Sep; 29(18):2300-10. PubMed ID: 23846746
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.
    Hu Y; Lin J; Hu J; Hu G; Wang K; Zhang H; Reilly MP; Li M
    Bioinformatics; 2018 Jul; 34(14):2384-2391. PubMed ID: 29474557
    [TBL] [Abstract][Full Text] [Related]  

  • 10. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
    Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
    Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
    [TBL] [Abstract][Full Text] [Related]  

  • 11. 3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists.
    Guo W; Tzioutziou NA; Stephen G; Milne I; Calixto CP; Waugh R; Brown JWS; Zhang R
    RNA Biol; 2021 Nov; 18(11):1574-1587. PubMed ID: 33345702
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data.
    Sullivan A; Purohit PK; Freese NH; Pasha A; Esteban E; Waese J; Wu A; Chen M; Chin CY; Song R; Watharkar SR; Chan AP; Krishnakumar V; Vaughn MW; Town C; Loraine AE; Provart NJ
    Plant J; 2019 Nov; 100(3):641-654. PubMed ID: 31350781
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A comprehensive workflow for optimizing RNA-seq data analysis.
    Jiang G; Zheng JY; Ren SN; Yin W; Xia X; Li Y; Wang HL
    BMC Genomics; 2024 Jun; 25(1):631. PubMed ID: 38914930
    [TBL] [Abstract][Full Text] [Related]  

  • 14. FungiExpresZ: an intuitive package for fungal gene expression data analysis, visualization and discovery.
    Parsania C; Chen R; Sethiya P; Miao Z; Dong L; Wong KH
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36806894
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Shark: fishing relevant reads in an RNA-Seq sample.
    Denti L; Pirola Y; Previtali M; Ceccato T; Della Vedova G; Rizzi R; Bonizzoni P
    Bioinformatics; 2021 May; 37(4):464-472. PubMed ID: 32926128
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).
    Sturgill D; Malone JH; Sun X; Smith HE; Rabinow L; Samson ML; Oliver B
    BMC Bioinformatics; 2013 Nov; 14():320. PubMed ID: 24209455
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Detection, annotation and visualization of alternative splicing from RNA-Seq data with SplicingViewer.
    Liu Q; Chen C; Shen E; Zhao F; Sun Z; Wu J
    Genomics; 2012 Mar; 99(3):178-82. PubMed ID: 22226708
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DIEGO: detection of differential alternative splicing using Aitchison's geometry.
    Doose G; Bernhart SH; Wagener R; Hoffmann S
    Bioinformatics; 2018 Mar; 34(6):1066-1068. PubMed ID: 29088309
    [TBL] [Abstract][Full Text] [Related]  

  • 19. nagnag: Identification and quantification of NAGNAG alternative splicing using RNA-Seq data.
    Yan X; Sablok G; Feng G; Ma J; Zhao H; Sun X
    FEBS Lett; 2015 Jul; 589(15):1766-70. PubMed ID: 26028313
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data.
    Kahles A; Ong CS; Zhong Y; Rätsch G
    Bioinformatics; 2016 Jun; 32(12):1840-7. PubMed ID: 26873928
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.