BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

108 related articles for article (PubMed ID: 36655763)

  • 1. Hierarchical modelling of microbial communities.
    Glöckler M; Dräger A; Mostolizadeh R
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36655763
    [TBL] [Abstract][Full Text] [Related]  

  • 2. NCMW: A Python Package to Analyze Metabolic Interactions in the Nasal Microbiome.
    Glöckler M; Dräger A; Mostolizadeh R
    Front Bioinform; 2022; 2():827024. PubMed ID: 36304309
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models.
    Mundy M; Mendes-Soares H; Chia N
    Bioinformatics; 2017 Aug; 33(15):2416-2418. PubMed ID: 28379466
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species.
    Belcour A; Frioux C; Aite M; Bretaudeau A; Hildebrand F; Siegel A
    Elife; 2020 Dec; 9():. PubMed ID: 33372654
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3.
    Smith LP; Hucka M; Hoops S; Finney A; Ginkel M; Myers CJ; Moraru I; Liebermeister W
    J Integr Bioinform; 2015 Sep; 12(2):268. PubMed ID: 26528566
    [TBL] [Abstract][Full Text] [Related]  

  • 6. M2R: a Python add-on to cobrapy for modifying human genome-scale metabolic reconstruction using the gut microbiota models.
    Weglarz-Tomczak E; Tomczak JM; Brul S
    Bioinformatics; 2021 Sep; 37(17):2785-2786. PubMed ID: 33523116
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks.
    Balaur I; Mazein A; Saqi M; Lysenko A; Rawlings CJ; Auffray C
    Bioinformatics; 2017 Apr; 33(7):1096-1098. PubMed ID: 27993779
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling.
    Jenior ML; Glass EM; Papin JA
    Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37279743
    [TBL] [Abstract][Full Text] [Related]  

  • 9. METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks.
    Zhou Z; Tran PQ; Breister AM; Liu Y; Kieft K; Cowley ES; Karaoz U; Anantharaman K
    Microbiome; 2022 Feb; 10(1):33. PubMed ID: 35172890
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mapping the entire functionally active endometrial microbiota.
    Sola-Leyva A; Andrés-León E; Molina NM; Terron-Camero LC; Plaza-Díaz J; Sáez-Lara MJ; Gonzalvo MC; Sánchez R; Ruíz S; Martínez L; Altmäe S
    Hum Reprod; 2021 Mar; 36(4):1021-1031. PubMed ID: 33598714
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CobraMod: a pathway-centric curation tool for constraint-based metabolic models.
    Camborda S; Weder JN; Töpfer N
    Bioinformatics; 2022 Apr; 38(9):2654-2656. PubMed ID: 35201291
    [TBL] [Abstract][Full Text] [Related]  

  • 12. OptFlux: an open-source software platform for in silico metabolic engineering.
    Rocha I; Maia P; Evangelista P; Vilaça P; Soares S; Pinto JP; Nielsen J; Patil KR; Ferreira EC; Rocha M
    BMC Syst Biol; 2010 Apr; 4():45. PubMed ID: 20403172
    [TBL] [Abstract][Full Text] [Related]  

  • 13. RevEcoR: an R package for the reverse ecology analysis of microbiomes.
    Cao Y; Wang Y; Zheng X; Li F; Bo X
    BMC Bioinformatics; 2016 Jul; 17(1):294. PubMed ID: 27473172
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Advances in Genome-Scale Metabolic Modeling toward Microbial Community Analysis of the Human Microbiome.
    Esvap E; Ulgen KO
    ACS Synth Biol; 2021 Sep; 10(9):2121-2137. PubMed ID: 34402617
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.
    Pitkänen E; Akerlund A; Rantanen A; Jouhten P; Ukkonen E
    J Integr Bioinform; 2008 Aug; 5(2):. PubMed ID: 20134058
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Acorn: a grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface.
    Sroka J; Bieniasz-Krzywiec L; Gwóźdź S; Leniowski D; Lącki J; Markowski M; Avignone-Rossa C; Bushell ME; McFadden J; Kierzek AM
    BMC Bioinformatics; 2011 May; 12():196. PubMed ID: 21609434
    [TBL] [Abstract][Full Text] [Related]  

  • 17. cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats.
    Balaur I; Roy L; Mazein A; Karaca SG; Dogrusoz U; Barillot E; Zinovyev A
    Bioinformatics; 2020 Apr; 36(8):2620-2622. PubMed ID: 31904823
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MetaboAnnotator: an efficient toolbox to annotate metabolites in genome-scale metabolic reconstructions.
    Thiele I; Preciat G; Fleming RMT
    Bioinformatics; 2022 Oct; 38(20):4831-4832. PubMed ID: 36047841
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PyCoMo: a python package for community metabolic model creation and analysis.
    Predl M; Mießkes M; Rattei T; Zanghellini J
    Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38532295
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions.
    Medlock GL; Moutinho TJ; Papin JA
    PLoS Comput Biol; 2020 Apr; 16(4):e1007847. PubMed ID: 32348298
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.