249 related articles for article (PubMed ID: 36656543)
1. ATAC-DEA: A Web-Based ATAC-Seq Data Differential Peak and Annotation Analysis Application.
Zhang S; Wang S
J Comput Biol; 2023 Mar; 30(3):337-345. PubMed ID: 36656543
[TBL] [Abstract][Full Text] [Related]
2. AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis.
Liu S; Li D; Lyu C; Gontarz PM; Miao B; Madden PAF; Wang T; Zhang B
Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):641-651. PubMed ID: 34273560
[TBL] [Abstract][Full Text] [Related]
3. GUAVA: A Graphical User Interface for the Analysis and Visualization of ATAC-seq Data.
Divate M; Cheung E
Front Genet; 2018; 9():250. PubMed ID: 30065749
[TBL] [Abstract][Full Text] [Related]
4. Analytical Approaches for ATAC-seq Data Analysis.
Smith JP; Sheffield NC
Curr Protoc Hum Genet; 2020 Jun; 106(1):e101. PubMed ID: 32543102
[TBL] [Abstract][Full Text] [Related]
5. Chromatin accessibility profiling by ATAC-seq.
Grandi FC; Modi H; Kampman L; Corces MR
Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
[TBL] [Abstract][Full Text] [Related]
6. CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis.
Qiu X; Feit AS; Feiglin A; Xie Y; Kesten N; Taing L; Perkins J; Gu S; Li Y; Cejas P; Zhou N; Jeselsohn R; Brown M; Shirley Liu X; Long HW
Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):652-661. PubMed ID: 34284136
[TBL] [Abstract][Full Text] [Related]
7. ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis.
Tatara M; Ikeda T; Namekawa SH; Maezawa S
Methods Mol Biol; 2023; 2577():65-81. PubMed ID: 36173566
[TBL] [Abstract][Full Text] [Related]
8. ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation.
Reske JJ; Wilson MR; Chandler RL
Epigenetics Chromatin; 2020 Apr; 13(1):22. PubMed ID: 32321567
[TBL] [Abstract][Full Text] [Related]
9. DEBrowser: interactive differential expression analysis and visualization tool for count data.
Kucukural A; Yukselen O; Ozata DM; Moore MJ; Garber M
BMC Genomics; 2019 Jan; 20(1):6. PubMed ID: 30611200
[TBL] [Abstract][Full Text] [Related]
10. Optimization of ATAC-seq in wheat seedling roots using INTACT-isolated nuclei.
Debernardi JM; Burguener G; Bubb K; Liu Q; Queitsch C; Dubcovsky J
BMC Plant Biol; 2023 May; 23(1):270. PubMed ID: 37211599
[TBL] [Abstract][Full Text] [Related]
11. Optimized assay for transposase-accessible chromatin by sequencing (ATAC-seq) library preparation from adult Drosophila melanogaster neurons.
Merrill CB; Pabon MA; Montgomery AB; Rodan AR; Rothenfluh A
Sci Rep; 2022 Apr; 12(1):6043. PubMed ID: 35411004
[TBL] [Abstract][Full Text] [Related]
12. Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
De Rop FV; Ismail JN; Bravo González-Blas C; Hulselmans GJ; Flerin CC; Janssens J; Theunis K; Christiaens VM; Wouters J; Marcassa G; de Wit J; Poovathingal S; Aerts S
Elife; 2022 Feb; 11():. PubMed ID: 35195064
[TBL] [Abstract][Full Text] [Related]
13. Bibliometric review of ATAC-Seq and its application in gene expression.
Luo L; Gribskov M; Wang S
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35255493
[TBL] [Abstract][Full Text] [Related]
14. ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq.
Lu RJ; Liu YT; Huang CW; Yen MR; Lin CY; Chen PY
Front Genet; 2020; 11():618478. PubMed ID: 33584814
[TBL] [Abstract][Full Text] [Related]
15. CATCH-UP: A High-Throughput Upstream-Pipeline for Bulk ATAC-Seq and ChIP-Seq Data.
Riva SG; Georgiades E; Gur ER; Baxter M; Hughes JR
J Vis Exp; 2023 Sep; (199):. PubMed ID: 37811941
[TBL] [Abstract][Full Text] [Related]
16. ATAC-seq Optimization for Cancer Epigenetics Research.
Cooper M; Ray A; Bhattacharya A; Dhasarathy A; Takaku M
J Vis Exp; 2022 Jun; (184):. PubMed ID: 35848835
[TBL] [Abstract][Full Text] [Related]
17. ATAC-seq Data Processing.
Kim DS
Methods Mol Biol; 2023; 2611():305-323. PubMed ID: 36807076
[TBL] [Abstract][Full Text] [Related]
18. Visualization of the landscape of the read alignment shape of ATAC-seq data using Hellinger distance metric.
Cheng JH; Zheng C; Yamada R; Okada D
Genes Cells; 2024 Jan; 29(1):5-16. PubMed ID: 37989133
[TBL] [Abstract][Full Text] [Related]
19. Epigenetic Application of ATAC-Seq Based on Tn5 Transposase Purification Technology.
Li W; Tim Wu U; Cheng Y; Huang Y; Mao L; Sun M; Qiu C; Zhou L; Gao L
Genet Res (Camb); 2022; 2022():8429207. PubMed ID: 36062065
[TBL] [Abstract][Full Text] [Related]
20. Cactus: A user-friendly and reproducible ATAC-Seq and mRNA-Seq analysis pipeline for data preprocessing, differential analysis, and enrichment analysis.
Salignon J; Millan-Ariño L; Garcia MU; Riedel CG
Genomics; 2024 Jul; 116(4):110858. PubMed ID: 38735595
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
