BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

130 related articles for article (PubMed ID: 36677391)

  • 1. Accuracy and Completeness of Long Read Metagenomic Assemblies.
    Buttler J; Drown DM
    Microorganisms; 2022 Dec; 11(1):. PubMed ID: 36677391
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing.
    Chen Z; Erickson DL; Meng J
    Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271875
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Benchmarking of long-read assemblers for prokaryote whole genome sequencing.
    Wick RR; Holt KE
    F1000Res; 2019; 8():2138. PubMed ID: 31984131
    [No Abstract]   [Full Text] [Related]  

  • 4. Comparing Long-Read Assemblers to Explore the Potential of a Sustainable Low-Cost, Low-Infrastructure Approach to Sequence Antimicrobial Resistant Bacteria With Oxford Nanopore Sequencing.
    Boostrom I; Portal EAR; Spiller OB; Walsh TR; Sands K
    Front Microbiol; 2022; 13():796465. PubMed ID: 35308384
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis.
    Baeza JA; García-De León FJ
    BMC Genomics; 2022 Apr; 23(1):320. PubMed ID: 35459089
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes.
    Yorki S; Shea T; Cuomo CA; Walker BJ; LaRocque RC; Manson AL; Earl AM; Worby CJ
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36804804
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Long read genome assemblers struggle with small plasmids.
    Johnson J; Soehnlen M; Blankenship HM
    Microb Genom; 2023 May; 9(5):. PubMed ID: 37224062
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Benchmarking of long-read sequencing, assemblers and polishers for yeast genome.
    Zhang X; Liu CG; Yang SH; Wang X; Bai FW; Wang Z
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35511110
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Benchmarking genome assembly methods on metagenomic sequencing data.
    Zhang Z; Yang C; Veldsman WP; Fang X; Zhang L
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36917471
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen,
    Foster-Nyarko E; Cottingham H; Wick RR; Judd LM; Lam MMC; Wyres KL; Stanton TD; Tsang KK; David S; Aanensen DM; Brisse S; Holt KE
    Microb Genom; 2023 Feb; 9(2):. PubMed ID: 36752781
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa (Knightia excelsa) genome.
    McCartney AM; Hilario E; Choi SS; Guhlin J; Prebble JM; Houliston G; Buckley TR; Chagné D
    Mol Ecol Resour; 2021 Aug; 21(6):2125-2144. PubMed ID: 33955186
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparative Evaluation of Genome Assemblers from Long-Read Sequencing for Plants and Crops.
    Jung H; Jeon MS; Hodgett M; Waterhouse P; Eyun SI
    J Agric Food Chem; 2020 Jul; 68(29):7670-7677. PubMed ID: 32530283
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
    Cherukuri Y; Janga SC
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms.
    Guiglielmoni N; Houtain A; Derzelle A; Van Doninck K; Flot JF
    BMC Bioinformatics; 2021 Jun; 22(1):303. PubMed ID: 34090340
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Hybrid Assembly Provides Improved Resolution of Plasmids, Antimicrobial Resistance Genes, and Virulence Factors in
    Khezri A; Avershina E; Ahmad R
    Microorganisms; 2021 Dec; 9(12):. PubMed ID: 34946161
    [TBL] [Abstract][Full Text] [Related]  

  • 17. LMAS: evaluating metagenomic short de novo assembly methods through defined communities.
    Mendes CI; Vila-Cerqueira P; Motro Y; Moran-Gilad J; Carriço JA; Ramirez M
    Gigascience; 2022 Dec; 12():. PubMed ID: 36576131
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.
    Bertrand D; Shaw J; Kalathiyappan M; Ng AHQ; Kumar MS; Li C; Dvornicic M; Soldo JP; Koh JY; Tong C; Ng OT; Barkham T; Young B; Marimuthu K; Chng KR; Sikic M; Nagarajan N
    Nat Biotechnol; 2019 Aug; 37(8):937-944. PubMed ID: 31359005
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Benchmarking hybrid assemblies of Giardia and prediction of widespread intra-isolate structural variation.
    Pollo SMJ; Reiling SJ; Wit J; Workentine ML; Guy RA; Batoff GW; Yee J; Dixon BR; Wasmuth JD
    Parasit Vectors; 2020 Feb; 13(1):108. PubMed ID: 32111234
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures.
    Neubert K; Zuchantke E; Leidenfrost RM; Wünschiers R; Grützke J; Malorny B; Brendebach H; Al Dahouk S; Homeier T; Hotzel H; Reinert K; Tomaso H; Busch A
    BMC Genomics; 2021 Nov; 22(1):822. PubMed ID: 34773979
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.