192 related articles for article (PubMed ID: 36688569)
1. Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching.
Arab I; Fondrie WE; Laukens K; Bittremieux W
J Proteome Res; 2023 Feb; 22(2):585-593. PubMed ID: 36688569
[TBL] [Abstract][Full Text] [Related]
2. Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing.
Bittremieux W; Meysman P; Noble WS; Laukens K
J Proteome Res; 2018 Oct; 17(10):3463-3474. PubMed ID: 30184435
[TBL] [Abstract][Full Text] [Related]
3. Sensitive and Specific Spectral Library Searching with CompOmics Spectral Library Searching Tool and Percolator.
Shiferaw GA; Gabriels R; Bouwmeester R; Van Den Bossche T; Vandermarliere E; Martens L; Volders PJ
J Proteome Res; 2022 May; 21(5):1365-1370. PubMed ID: 35446579
[TBL] [Abstract][Full Text] [Related]
4. Extremely Fast and Accurate Open Modification Spectral Library Searching of High-Resolution Mass Spectra Using Feature Hashing and Graphics Processing Units.
Bittremieux W; Laukens K; Noble WS
J Proteome Res; 2019 Oct; 18(10):3792-3799. PubMed ID: 31448616
[TBL] [Abstract][Full Text] [Related]
5. Accelerating open modification spectral library searching on tensor core in high-dimensional space.
Kang J; Xu W; Bittremieux W; Moshiri N; Rosing T
Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37369033
[TBL] [Abstract][Full Text] [Related]
6. A Hybrid Spectral Library and Protein Sequence Database Search Strategy for Bottom-Up and Top-Down Proteomic Data Analysis.
Dai Y; Millikin RJ; Rolfs Z; Shortreed MR; Smith LM
J Proteome Res; 2022 Nov; 21(11):2609-2618. PubMed ID: 36206157
[TBL] [Abstract][Full Text] [Related]
7. Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomics.
Lam H; Deutsch EW; Aebersold R
J Proteome Res; 2010 Jan; 9(1):605-10. PubMed ID: 19916561
[TBL] [Abstract][Full Text] [Related]
8. Spectral library searching for peptide identification via tandem MS.
Lam H; Aebersold R
Methods Mol Biol; 2010; 604():95-103. PubMed ID: 20013366
[TBL] [Abstract][Full Text] [Related]
9. Comparative database search engine analysis on massive tandem mass spectra of pork-based food products for halal proteomics.
Amir SH; Yuswan MH; Aizat WM; Mansor MK; Desa MNM; Yusof YA; Song LK; Mustafa S
J Proteomics; 2021 Jun; 241():104240. PubMed ID: 33894373
[TBL] [Abstract][Full Text] [Related]
10. COSS: A Fast and User-Friendly Tool for Spectral Library Searching.
Shiferaw GA; Vandermarliere E; Hulstaert N; Gabriels R; Martens L; Volders PJ
J Proteome Res; 2020 Jul; 19(7):2786-2793. PubMed ID: 32384242
[TBL] [Abstract][Full Text] [Related]
11. Tandem mass spectrometry spectral libraries and library searching.
Deutsch EW
Methods Mol Biol; 2011; 696():225-32. PubMed ID: 21063950
[TBL] [Abstract][Full Text] [Related]
12. Development and validation of a spectral library searching method for peptide identification from MS/MS.
Lam H; Deutsch EW; Eddes JS; Eng JK; King N; Stein SE; Aebersold R
Proteomics; 2007 Mar; 7(5):655-67. PubMed ID: 17295354
[TBL] [Abstract][Full Text] [Related]
13. Scribe: Next Generation Library Searching for DDA Experiments.
Searle BC; Shannon AE; Wilburn DB
J Proteome Res; 2023 Feb; 22(2):482-490. PubMed ID: 36695531
[TBL] [Abstract][Full Text] [Related]
14. Spectral library searching in proteomics.
Griss J
Proteomics; 2016 Mar; 16(5):729-40. PubMed ID: 26616598
[TBL] [Abstract][Full Text] [Related]
15. Spectral library search for improved TMTpro labelled peptide assignment in human plasma proteomics.
Palstrøm NB; Campbell AJ; Lindegaard CA; Cakar S; Matthiesen R; Beck HC
Proteomics; 2024 Mar; 24(6):e2300236. PubMed ID: 37706597
[TBL] [Abstract][Full Text] [Related]
16. Building and searching tandem mass spectral libraries for peptide identification.
Lam H
Mol Cell Proteomics; 2011 Dec; 10(12):R111.008565. PubMed ID: 21900153
[TBL] [Abstract][Full Text] [Related]
17. AIomics: Exploring More of the Proteome Using Mass Spectral Libraries Extended by Artificial Intelligence.
Geer LY; Lapin J; Slotta DJ; Mak TD; Stein SE
J Proteome Res; 2023 Jul; 22(7):2246-2255. PubMed ID: 37232537
[TBL] [Abstract][Full Text] [Related]
18. TIDD: tool-independent and data-dependent machine learning for peptide identification.
Li H; Na S; Hwang KB; Paek E
BMC Bioinformatics; 2022 Mar; 23(1):109. PubMed ID: 35354356
[TBL] [Abstract][Full Text] [Related]
19. Mistle: bringing spectral library predictions to metaproteomics with an efficient search index.
Nowatzky Y; Benner P; Reinert K; Muth T
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37294786
[TBL] [Abstract][Full Text] [Related]
20. Using spectral libraries for peptide identification from tandem mass spectrometry (MS/MS) data.
Lam H; Aebersold R
Curr Protoc Protein Sci; 2010 Apr; Chapter 25():25.5.1-25.5.9. PubMed ID: 20393975
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]