BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

202 related articles for article (PubMed ID: 36688604)

  • 21. Using spectral libraries for peptide identification from tandem mass spectrometry (MS/MS) data.
    Lam H; Aebersold R
    Curr Protoc Protein Sci; 2010 Apr; Chapter 25():25.5.1-25.5.9. PubMed ID: 20393975
    [TBL] [Abstract][Full Text] [Related]  

  • 22. [Progress in the spectral library based protein identification strategy].
    Yu D; Ma J; Xie Z; Bai M; Zhu Y; Shu K
    Sheng Wu Gong Cheng Xue Bao; 2018 Apr; 34(4):525-536. PubMed ID: 29701026
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Scribe: Next Generation Library Searching for DDA Experiments.
    Searle BC; Shannon AE; Wilburn DB
    J Proteome Res; 2023 Feb; 22(2):482-490. PubMed ID: 36695531
    [TBL] [Abstract][Full Text] [Related]  

  • 24. A semi-empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries.
    Hu Y; Li Y; Lam H
    Proteomics; 2011 Dec; 11(24):4702-11. PubMed ID: 22038894
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Development and validation of a spectral library searching method for peptide identification from MS/MS.
    Lam H; Deutsch EW; Eddes JS; Eng JK; King N; Stein SE; Aebersold R
    Proteomics; 2007 Mar; 7(5):655-67. PubMed ID: 17295354
    [TBL] [Abstract][Full Text] [Related]  

  • 26. NeuroPedia: neuropeptide database and spectral library.
    Kim Y; Bark S; Hook V; Bandeira N
    Bioinformatics; 2011 Oct; 27(19):2772-3. PubMed ID: 21821666
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment.
    Dasari S; Chambers MC; Martinez MA; Carpenter KL; Ham AJ; Vega-Montoto LJ; Tabb DL
    J Proteome Res; 2012 Mar; 11(3):1686-95. PubMed ID: 22217208
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Search and decoy: the automatic identification of mass spectra.
    Eisenacher M; Kohl M; Turewicz M; Koch MH; Uszkoreit J; Stephan C
    Methods Mol Biol; 2012; 893():445-88. PubMed ID: 22665317
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Efficient reduction of candidate matches in peptide spectrum library searching using the top k most intense peaks.
    Vu TN; Bittremieux W; Valkenborg D; Goethals B; Lemière F; Laukens K
    J Proteome Res; 2014 Sep; 13(9):4175-83. PubMed ID: 25004400
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Merging Full-Spectrum and Fragment Ion Intensity Predictions from Deep Learning for High-Quality Spectral Libraries.
    Chan CMJ; Lam H
    J Proteome Res; 2023 Dec; 22(12):3692-3702. PubMed ID: 37910637
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Combination of Multiple Spectral Libraries Improves the Current Search Methods Used to Identify Missing Proteins in the Chromosome-Centric Human Proteome Project.
    Cho JY; Lee HJ; Jeong SK; Kim KY; Kwon KH; Yoo JS; Omenn GS; Baker MS; Hancock WS; Paik YK
    J Proteome Res; 2015 Dec; 14(12):4959-66. PubMed ID: 26330117
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Micro-Data-Independent Acquisition for High-Throughput Proteomics and Sensitive Peptide Mass Spectrum Identification.
    Heaven MR; Cobbs AL; Nei YW; Gutierrez DB; Herren AW; Gunawardena HP; Caprioli RM; Norris JL
    Anal Chem; 2018 Aug; 90(15):8905-8911. PubMed ID: 29984981
    [TBL] [Abstract][Full Text] [Related]  

  • 33. AIomics: Exploring More of the Proteome Using Mass Spectral Libraries Extended by Artificial Intelligence.
    Geer LY; Lapin J; Slotta DJ; Mak TD; Stein SE
    J Proteome Res; 2023 Jul; 22(7):2246-2255. PubMed ID: 37232537
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching.
    Arab I; Fondrie WE; Laukens K; Bittremieux W
    J Proteome Res; 2023 Feb; 22(2):585-593. PubMed ID: 36688569
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Using annotated peptide mass spectrum libraries for protein identification.
    Craig R; Cortens JC; Fenyo D; Beavis RC
    J Proteome Res; 2006 Aug; 5(8):1843-9. PubMed ID: 16889405
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Spectrum-to-spectrum searching using a proteome-wide spectral library.
    Yen CY; Houel S; Ahn NG; Old WM
    Mol Cell Proteomics; 2011 Jul; 10(7):M111.007666. PubMed ID: 21532008
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Mistle: bringing spectral library predictions to metaproteomics with an efficient search index.
    Nowatzky Y; Benner P; Reinert K; Muth T
    Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37294786
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing.
    Bittremieux W; Meysman P; Noble WS; Laukens K
    J Proteome Res; 2018 Oct; 17(10):3463-3474. PubMed ID: 30184435
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Accelerating open modification spectral library searching on tensor core in high-dimensional space.
    Kang J; Xu W; Bittremieux W; Moshiri N; Rosing T
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37369033
    [TBL] [Abstract][Full Text] [Related]  

  • 40. SpecEncoder: deep metric learning for accurate peptide identification in proteomics.
    Liu K; Tao C; Ye Y; Tang H
    Bioinformatics; 2024 Jun; 40(Supplement_1):i257-i265. PubMed ID: 38940141
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.