179 related articles for article (PubMed ID: 36692004)
1. The use of non-functional clonotypes as a natural calibrator for quantitative bias correction in adaptive immune receptor repertoire profiling.
Smirnova AO; Miroshnichenkova AM; Olshanskaya YV; Maschan MA; Lebedev YB; Chudakov DM; Mamedov IZ; Komkov A
Elife; 2023 Jan; 12():. PubMed ID: 36692004
[TBL] [Abstract][Full Text] [Related]
2. Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases.
Barennes P; Quiniou V; Shugay M; Egorov ES; Davydov AN; Chudakov DM; Uddin I; Ismail M; Oakes T; Chain B; Eugster A; Kashofer K; Rainer PP; Darko S; Ransier A; Douek DC; Klatzmann D; Mariotti-Ferrandiz E
Nat Biotechnol; 2021 Feb; 39(2):236-245. PubMed ID: 32895550
[TBL] [Abstract][Full Text] [Related]
3. A new high-throughput sequencing method for determining diversity and similarity of T cell receptor (TCR) α and β repertoires and identifying potential new invariant TCR α chains.
Kitaura K; Shini T; Matsutani T; Suzuki R
BMC Immunol; 2016 Oct; 17(1):38. PubMed ID: 27729009
[TBL] [Abstract][Full Text] [Related]
4. T-cell receptor and B-cell receptor repertoire profiling in adaptive immunity.
Minervina A; Pogorelyy M; Mamedov I
Transpl Int; 2019 Nov; 32(11):1111-1123. PubMed ID: 31250479
[TBL] [Abstract][Full Text] [Related]
5. ImmunoDataAnalyzer: a bioinformatics pipeline for processing barcoded and UMI tagged immunological NGS data.
Vetter J; Schaller S; Heinzel A; Aschauer C; Reindl-Schwaighofer R; Jelencsics K; Hu K; Oberbauer R; Winkler SM
BMC Bioinformatics; 2022 Jan; 23(1):21. PubMed ID: 34991455
[TBL] [Abstract][Full Text] [Related]
6. High-throughput sequencing of CD4
Wang L; Zhang P; Li J; Lu H; Peng L; Ling J; Zhang X; Zeng X; Zhao Y; Zhang W
Arthritis Res Ther; 2019 Dec; 21(1):295. PubMed ID: 31856905
[TBL] [Abstract][Full Text] [Related]
7. Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.
Bolotin DA; Mamedov IZ; Britanova OV; Zvyagin IV; Shagin D; Ustyugova SV; Turchaninova MA; Lukyanov S; Lebedev YB; Chudakov DM
Eur J Immunol; 2012 Nov; 42(11):3073-83. PubMed ID: 22806588
[TBL] [Abstract][Full Text] [Related]
8. Describing the diversity of Ag specific receptors in vertebrates: Contribution of repertoire deep sequencing.
Castro R; Navelsaker S; Krasnov A; Du Pasquier L; Boudinot P
Dev Comp Immunol; 2017 Oct; 75():28-37. PubMed ID: 28259700
[TBL] [Abstract][Full Text] [Related]
9. IRProfiler - a software toolbox for high throughput immune receptor profiling.
Maramis C; Gkoufas A; Vardi A; Stalika E; Stamatopoulos K; Hatzidimitriou A; Maglaveras N; Chouvarda I
BMC Bioinformatics; 2018 Apr; 19(1):144. PubMed ID: 29669518
[TBL] [Abstract][Full Text] [Related]
10. Tools for fundamental analysis functions of TCR repertoires: a systematic comparison.
Zhang Y; Yang X; Zhang Y; Zhang Y; Wang M; Ou JX; Zhu Y; Zeng H; Wu J; Lan C; Zhou HW; Yang W; Zhang Z
Brief Bioinform; 2020 Sep; 21(5):1706-1716. PubMed ID: 31624828
[TBL] [Abstract][Full Text] [Related]
11. Dissecting efficiency of a 5' rapid amplification of cDNA ends (5'-RACE) approach for profiling T-cell receptor beta repertoire.
Lin YH; Hung SJ; Chen YL; Lin CH; Kung TF; Yeh YC; Tseng JT; Liu T
PLoS One; 2020; 15(7):e0236366. PubMed ID: 32702062
[TBL] [Abstract][Full Text] [Related]
12. NoisET: Noise Learning and Expansion Detection of T-Cell Receptors.
Koraichi MB; Touzel MP; Mazzolini A; Mora T; Walczak AM
J Phys Chem A; 2022 Oct; 126(40):7407-7414. PubMed ID: 36178325
[TBL] [Abstract][Full Text] [Related]
13. Quantitative analysis of the T cell receptor repertoire.
Uddin I; Woolston A; Peacock T; Joshi K; Ismail M; Ronel T; Husovsky C; Chain B
Methods Enzymol; 2019; 629():465-492. PubMed ID: 31727254
[TBL] [Abstract][Full Text] [Related]
14. Alterations in T and B Cell Receptor Repertoires Patterns in Patients With IL10 Signaling Defects and History of Infantile-Onset IBD.
Werner L; Lee YN; Rechavi E; Lev A; Yerushalmi B; Ling G; Shah N; Uhlig HH; Weiss B; Somech R; Snapper SB; Shouval DS
Front Immunol; 2020; 11():109. PubMed ID: 32117262
[TBL] [Abstract][Full Text] [Related]
15. 3D: diversity, dynamics, differential testing - a proposed pipeline for analysis of next-generation sequencing T cell repertoire data.
Zhang L; Cham J; Paciorek A; Trager J; Sheikh N; Fong L
BMC Bioinformatics; 2017 Feb; 18(1):129. PubMed ID: 28241742
[TBL] [Abstract][Full Text] [Related]
16. Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires.
Miho E; Yermanos A; Weber CR; Berger CT; Reddy ST; Greiff V
Front Immunol; 2018; 9():224. PubMed ID: 29515569
[TBL] [Abstract][Full Text] [Related]
17. Method for identification of condition-associated public antigen receptor sequences.
Pogorelyy MV; Minervina AA; Chudakov DM; Mamedov IZ; Lebedev YB; Mora T; Walczak AM
Elife; 2018 Mar; 7():. PubMed ID: 29533178
[TBL] [Abstract][Full Text] [Related]
18. Characteristics of T cell receptor repertoires of patients with acute myocardial infarction through high-throughput sequencing.
Zhong Z; Wu H; Zhang Q; Zhong W; Zhao P
J Transl Med; 2019 Jan; 17(1):21. PubMed ID: 30634977
[TBL] [Abstract][Full Text] [Related]
19. FUME-TCRseq Enables Sensitive and Accurate Sequencing of the T-cell Receptor from Limited Input of Degraded RNA.
Baker AM; Nageswaran G; Nenclares P; Ronel T; Smith K; Kimberley C; Laclé MM; Bhide S; Harrington KJ; Melcher A; Rodriguez-Justo M; Chain B; Graham TA
Cancer Res; 2024 May; 84(10):1560-1569. PubMed ID: 38479434
[TBL] [Abstract][Full Text] [Related]
20. Ultra-efficient sequencing of T Cell receptor repertoires reveals shared responses in muscle from patients with Myositis.
Montagne JM; Zheng XA; Pinal-Fernandez I; Milisenda JC; Christopher-Stine L; Lloyd TE; Mammen AL; Larman HB
EBioMedicine; 2020 Sep; 59():102972. PubMed ID: 32891935
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
