These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

137 related articles for article (PubMed ID: 36711453)

  • 1. A new gene finding tool GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes.
    Bruna T; Lomsadze A; Borodovsky M
    bioRxiv; 2024 Apr; ():. PubMed ID: 36711453
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes.
    Brůna T; Lomsadze A; Borodovsky M
    Genome Res; 2024 Jun; 34(5):757-768. PubMed ID: 38866548
    [TBL] [Abstract][Full Text] [Related]  

  • 3. BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA.
    Gabriel L; Brůna T; Hoff KJ; Ebel M; Lomsadze A; Borodovsky M; Stanke M
    bioRxiv; 2024 Feb; ():. PubMed ID: 37398387
    [TBL] [Abstract][Full Text] [Related]  

  • 4. BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA.
    Gabriel L; Brůna T; Hoff KJ; Ebel M; Lomsadze A; Borodovsky M; Stanke M
    Genome Res; 2024 Jun; 34(5):769-777. PubMed ID: 38866550
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS.
    Hoff KJ; Lange S; Lomsadze A; Borodovsky M; Stanke M
    Bioinformatics; 2016 Mar; 32(5):767-9. PubMed ID: 26559507
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins.
    Brůna T; Lomsadze A; Borodovsky M
    NAR Genom Bioinform; 2020 Jun; 2(2):lqaa026. PubMed ID: 32440658
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database.
    Brůna T; Hoff KJ; Lomsadze A; Stanke M; Borodovsky M
    NAR Genom Bioinform; 2021 Mar; 3(1):lqaa108. PubMed ID: 33575650
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Eukaryotic gene prediction using GeneMark.hmm-E and GeneMark-ES.
    Borodovsky M; Lomsadze A
    Curr Protoc Bioinformatics; 2011 Sep; Chapter 4():4.6.1-4.6.10. PubMed ID: 21901742
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Whole-Genome Annotation with BRAKER.
    Hoff KJ; Lomsadze A; Borodovsky M; Stanke M
    Methods Mol Biol; 2019; 1962():65-95. PubMed ID: 31020555
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm.
    Lomsadze A; Burns PD; Borodovsky M
    Nucleic Acids Res; 2014 Sep; 42(15):e119. PubMed ID: 24990371
    [TBL] [Abstract][Full Text] [Related]  

  • 11. TSEBRA: transcript selector for BRAKER.
    Gabriel L; Hoff KJ; Brůna T; Borodovsky M; Stanke M
    BMC Bioinformatics; 2021 Nov; 22(1):566. PubMed ID: 34823473
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes.
    Guo FB; Zhang CT
    BMC Bioinformatics; 2006 Jan; 7():9. PubMed ID: 16401352
    [TBL] [Abstract][Full Text] [Related]  

  • 13. How to interpret an anonymous bacterial genome: machine learning approach to gene identification.
    Hayes WS; Borodovsky M
    Genome Res; 1998 Nov; 8(11):1154-71. PubMed ID: 9847079
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluating high-throughput ab initio gene finders to discover proteins encoded in eukaryotic pathogen genomes missed by laboratory techniques.
    Goodswen SJ; Kennedy PJ; Ellis JT
    PLoS One; 2012; 7(11):e50609. PubMed ID: 23226328
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Finding prokaryotic genes by the 'frame-by-frame' algorithm: targeting gene starts and overlapping genes.
    Shmatkov AM; Melikyan AA; Chernousko FL; Borodovsky M
    Bioinformatics; 1999 Nov; 15(11):874-86. PubMed ID: 10743554
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Probabilistic methods of identifying genes in prokaryotic genomes: connections to the HMM theory.
    Azad RK; Borodovsky M
    Brief Bioinform; 2004 Jun; 5(2):118-30. PubMed ID: 15260893
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.
    Besemer J; Borodovsky M
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W451-4. PubMed ID: 15980510
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Applications of GeneMark in multispecies environments.
    McIninch JD; Hayes WS; Borodovsky M
    Proc Int Conf Intell Syst Mol Biol; 1996; 4():165-75. PubMed ID: 8877516
    [TBL] [Abstract][Full Text] [Related]  

  • 19. GeneMark.hmm: new solutions for gene finding.
    Lukashin AV; Borodovsky M
    Nucleic Acids Res; 1998 Feb; 26(4):1107-15. PubMed ID: 9461475
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 7.