BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

172 related articles for article (PubMed ID: 36711528)

  • 1. ConDoR: Tumor phylogeny inference with a copy-number constrained mutation loss model.
    Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
    bioRxiv; 2023 Jan; ():. PubMed ID: 36711528
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model.
    Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
    Genome Biol; 2023 Nov; 24(1):272. PubMed ID: 38037115
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses.
    Satas G; Zaccaria S; Mon G; Raphael BJ
    Cell Syst; 2020 Apr; 10(4):323-332.e8. PubMed ID: 32864481
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error.
    El-Kebir M
    Bioinformatics; 2018 Sep; 34(17):i671-i679. PubMed ID: 30423070
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BiTSC 2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data.
    Chen Z; Gong F; Wan L; Ma L
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35368055
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Inferring single-cell copy number profiles through cross-cell segmentation of read counts.
    Liu F; Shi F; Yu Z
    BMC Genomics; 2024 Jan; 25(1):25. PubMed ID: 38166601
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Copy number evolution with weighted aberrations in cancer.
    Zeira R; Raphael BJ
    Bioinformatics; 2020 Jul; 36(Suppl_1):i344-i352. PubMed ID: 32657354
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.
    Rozhoňová H; Danciu D; Stark S; Rätsch G; Kahles A; Lehmann KV
    Bioinformatics; 2022 Sep; 38(18):4293-4300. PubMed ID: 35900151
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Integrating SNVs and CNAs on a phylogenetic tree from single-cell DNA sequencing data.
    Zhang L; Bass HW; Irianto J; Mallory X
    Genome Res; 2023 Nov; 33(11):2002-17. PubMed ID: 37993137
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors.
    Weber LL; Zhang C; Ochoa I; El-Kebir M
    PLoS Comput Biol; 2023 Oct; 19(10):e1011544. PubMed ID: 37819942
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Parsimonious Clone Tree Integration in cancer.
    Sashittal P; Zaccaria S; El-Kebir M
    Algorithms Mol Biol; 2022 Mar; 17(1):3. PubMed ID: 35282838
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Mutation discovery in regions of segmental cancer genome amplifications with CoNAn-SNV: a mixture model for next generation sequencing of tumors.
    Crisan A; Goya R; Ha G; Ding J; Prentice LM; Oloumi A; Senz J; Zeng T; Tse K; Delaney A; Marra MA; Huntsman DG; Hirst M; Aparicio S; Shah S
    PLoS One; 2012; 7(8):e41551. PubMed ID: 22916110
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Inferring clonal evolution of tumors from single nucleotide somatic mutations.
    Jiao W; Vembu S; Deshwar AG; Stein L; Morris Q
    BMC Bioinformatics; 2014 Feb; 15():35. PubMed ID: 24484323
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Inferring the Mutational History of a Tumor Using Multi-state Perfect Phylogeny Mixtures.
    El-Kebir M; Satas G; Oesper L; Raphael BJ
    Cell Syst; 2016 Jul; 3(1):43-53. PubMed ID: 27467246
    [TBL] [Abstract][Full Text] [Related]  

  • 15. AMC: accurate mutation clustering from single-cell DNA sequencing data.
    Yu Z; Du F
    Bioinformatics; 2022 Mar; 38(6):1732-1734. PubMed ID: 34951625
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.
    Fu X; Lei H; Tao Y; Schwartz R
    Bioinformatics; 2022 Jun; 38(Suppl 1):i125-i133. PubMed ID: 35758777
    [TBL] [Abstract][Full Text] [Related]  

  • 17. COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data.
    Sollier E; Kuipers J; Takahashi K; Beerenwinkel N; Jahn K
    Nat Commun; 2023 Aug; 14(1):4921. PubMed ID: 37582954
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data.
    Zaccaria S; Raphael BJ
    Nat Commun; 2020 Sep; 11(1):4301. PubMed ID: 32879317
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA.
    Paul MR; Levitt NP; Moore DE; Watson PM; Wilson RC; Denlinger CE; Watson DK; Anderson PE
    BMC Genomics; 2016 Mar; 17():263. PubMed ID: 27029813
    [TBL] [Abstract][Full Text] [Related]  

  • 20. DeCiFering the elusive cancer cell fraction in tumor heterogeneity and evolution.
    Satas G; Zaccaria S; El-Kebir M; Raphael BJ
    Cell Syst; 2021 Oct; 12(10):1004-1018.e10. PubMed ID: 34416171
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.