172 related articles for article (PubMed ID: 36711528)
1. ConDoR: Tumor phylogeny inference with a copy-number constrained mutation loss model.
Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
bioRxiv; 2023 Jan; ():. PubMed ID: 36711528
[TBL] [Abstract][Full Text] [Related]
2. ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model.
Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
Genome Biol; 2023 Nov; 24(1):272. PubMed ID: 38037115
[TBL] [Abstract][Full Text] [Related]
3. SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses.
Satas G; Zaccaria S; Mon G; Raphael BJ
Cell Syst; 2020 Apr; 10(4):323-332.e8. PubMed ID: 32864481
[TBL] [Abstract][Full Text] [Related]
4. SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error.
El-Kebir M
Bioinformatics; 2018 Sep; 34(17):i671-i679. PubMed ID: 30423070
[TBL] [Abstract][Full Text] [Related]
5. BiTSC 2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data.
Chen Z; Gong F; Wan L; Ma L
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35368055
[TBL] [Abstract][Full Text] [Related]
6. Inferring single-cell copy number profiles through cross-cell segmentation of read counts.
Liu F; Shi F; Yu Z
BMC Genomics; 2024 Jan; 25(1):25. PubMed ID: 38166601
[TBL] [Abstract][Full Text] [Related]
7. Copy number evolution with weighted aberrations in cancer.
Zeira R; Raphael BJ
Bioinformatics; 2020 Jul; 36(Suppl_1):i344-i352. PubMed ID: 32657354
[TBL] [Abstract][Full Text] [Related]
8. SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.
Rozhoňová H; Danciu D; Stark S; Rätsch G; Kahles A; Lehmann KV
Bioinformatics; 2022 Sep; 38(18):4293-4300. PubMed ID: 35900151
[TBL] [Abstract][Full Text] [Related]
9. Integrating SNVs and CNAs on a phylogenetic tree from single-cell DNA sequencing data.
Zhang L; Bass HW; Irianto J; Mallory X
Genome Res; 2023 Nov; 33(11):2002-17. PubMed ID: 37993137
[TBL] [Abstract][Full Text] [Related]
10. Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors.
Weber LL; Zhang C; Ochoa I; El-Kebir M
PLoS Comput Biol; 2023 Oct; 19(10):e1011544. PubMed ID: 37819942
[TBL] [Abstract][Full Text] [Related]
11. Parsimonious Clone Tree Integration in cancer.
Sashittal P; Zaccaria S; El-Kebir M
Algorithms Mol Biol; 2022 Mar; 17(1):3. PubMed ID: 35282838
[TBL] [Abstract][Full Text] [Related]
12. Mutation discovery in regions of segmental cancer genome amplifications with CoNAn-SNV: a mixture model for next generation sequencing of tumors.
Crisan A; Goya R; Ha G; Ding J; Prentice LM; Oloumi A; Senz J; Zeng T; Tse K; Delaney A; Marra MA; Huntsman DG; Hirst M; Aparicio S; Shah S
PLoS One; 2012; 7(8):e41551. PubMed ID: 22916110
[TBL] [Abstract][Full Text] [Related]
13. Inferring clonal evolution of tumors from single nucleotide somatic mutations.
Jiao W; Vembu S; Deshwar AG; Stein L; Morris Q
BMC Bioinformatics; 2014 Feb; 15():35. PubMed ID: 24484323
[TBL] [Abstract][Full Text] [Related]
14. Inferring the Mutational History of a Tumor Using Multi-state Perfect Phylogeny Mixtures.
El-Kebir M; Satas G; Oesper L; Raphael BJ
Cell Syst; 2016 Jul; 3(1):43-53. PubMed ID: 27467246
[TBL] [Abstract][Full Text] [Related]
15. AMC: accurate mutation clustering from single-cell DNA sequencing data.
Yu Z; Du F
Bioinformatics; 2022 Mar; 38(6):1732-1734. PubMed ID: 34951625
[TBL] [Abstract][Full Text] [Related]
16. Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.
Fu X; Lei H; Tao Y; Schwartz R
Bioinformatics; 2022 Jun; 38(Suppl 1):i125-i133. PubMed ID: 35758777
[TBL] [Abstract][Full Text] [Related]
17. COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data.
Sollier E; Kuipers J; Takahashi K; Beerenwinkel N; Jahn K
Nat Commun; 2023 Aug; 14(1):4921. PubMed ID: 37582954
[TBL] [Abstract][Full Text] [Related]
18. Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data.
Zaccaria S; Raphael BJ
Nat Commun; 2020 Sep; 11(1):4301. PubMed ID: 32879317
[TBL] [Abstract][Full Text] [Related]
19. Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA.
Paul MR; Levitt NP; Moore DE; Watson PM; Wilson RC; Denlinger CE; Watson DK; Anderson PE
BMC Genomics; 2016 Mar; 17():263. PubMed ID: 27029813
[TBL] [Abstract][Full Text] [Related]
20. DeCiFering the elusive cancer cell fraction in tumor heterogeneity and evolution.
Satas G; Zaccaria S; El-Kebir M; Raphael BJ
Cell Syst; 2021 Oct; 12(10):1004-1018.e10. PubMed ID: 34416171
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]