BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

171 related articles for article (PubMed ID: 36712343)

  • 1. NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters.
    Leão TF; Wang M; da Silva R; Gurevich A; Bauermeister A; Gomes PWP; Brejnrod A; Glukhov E; Aron AT; Louwen JJR; Kim HW; Reher R; Fiore MF; van der Hooft JJJ; Gerwick L; Gerwick WH; Bandeira N; Dorrestein PC
    PNAS Nexus; 2022 Nov; 1(5):pgac257. PubMed ID: 36712343
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Enhanced correlation-based linking of biosynthetic gene clusters to their metabolic products through chemical class matching.
    Louwen JJR; Medema MH; van der Hooft JJJ
    Microbiome; 2023 Jan; 11(1):13. PubMed ID: 36691088
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Comprehensive Large-Scale Integrative Analysis of Omics Data To Accelerate Specialized Metabolite Discovery.
    Louwen JJR; van der Hooft JJJ
    mSystems; 2021 Aug; 6(4):e0072621. PubMed ID: 34427506
    [TBL] [Abstract][Full Text] [Related]  

  • 4. [A novel method for efficient screening and annotation of important pathway-associated metabolites based on the modified metabolome and probe molecules].
    Li Z; Zheng F; Xia Y; Zhang X; Wang X; Zhao C; Zhao X; Lu X; Xu G
    Se Pu; 2022 Sep; 40(9):788-796. PubMed ID: 36156625
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The Tripod for Bacterial Natural Product Discovery: Genome Mining, Silent Pathway Induction, and Mass Spectrometry-Based Molecular Networking.
    Trivella DBB; de Felicio R
    mSystems; 2018; 3(2):. PubMed ID: 29629418
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Integrative omics approaches for biosynthetic pathway discovery in plants.
    Singh KS; van der Hooft JJJ; van Wees SCM; Medema MH
    Nat Prod Rep; 2022 Sep; 39(9):1876-1896. PubMed ID: 35997060
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Predicting fungal secondary metabolite activity from biosynthetic gene cluster data using machine learning.
    Riedling O; Walker AS; Rokas A
    Microbiol Spectr; 2024 Feb; 12(2):e0340023. PubMed ID: 38193680
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Relative mass defect filtering of mass spectra: a path to discovery of plant specialized metabolites.
    Ekanayaka EA; Celiz MD; Jones AD
    Plant Physiol; 2015 Apr; 167(4):1221-32. PubMed ID: 25659383
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters.
    Terlouw BR; Blin K; Navarro-Muñoz JC; Avalon NE; Chevrette MG; Egbert S; Lee S; Meijer D; Recchia MJJ; Reitz ZL; van Santen JA; Selem-Mojica N; Tørring T; Zaroubi L; Alanjary M; Aleti G; Aguilar C; Al-Salihi SAA; Augustijn HE; Avelar-Rivas JA; Avitia-Domínguez LA; Barona-Gómez F; Bernaldo-Agüero J; Bielinski VA; Biermann F; Booth TJ; Carrion Bravo VJ; Castelo-Branco R; Chagas FO; Cruz-Morales P; Du C; Duncan KR; Gavriilidou A; Gayrard D; Gutiérrez-García K; Haslinger K; Helfrich EJN; van der Hooft JJJ; Jati AP; Kalkreuter E; Kalyvas N; Kang KB; Kautsar S; Kim W; Kunjapur AM; Li YX; Lin GM; Loureiro C; Louwen JJR; Louwen NLL; Lund G; Parra J; Philmus B; Pourmohsenin B; Pronk LJU; Rego A; Rex DAB; Robinson S; Rosas-Becerra LR; Roxborough ET; Schorn MA; Scobie DJ; Singh KS; Sokolova N; Tang X; Udwary D; Vigneshwari A; Vind K; Vromans SPJM; Waschulin V; Williams SE; Winter JM; Witte TE; Xie H; Yang D; Yu J; Zdouc M; Zhong Z; Collemare J; Linington RG; Weber T; Medema MH
    Nucleic Acids Res; 2023 Jan; 51(D1):D603-D610. PubMed ID: 36399496
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Global analysis of the biosynthetic chemical space of marine prokaryotes.
    Wei B; Hu GA; Zhou ZY; Yu WC; Du AQ; Yang CL; Yu YL; Chen JW; Zhang HW; Wu Q; Xuan Q; Xu XW; Wang H
    Microbiome; 2023 Jun; 11(1):144. PubMed ID: 37370187
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-guided investigation of secondary metabolites produced by a potential new strain Streptomyces BA2 isolated from an endemic plant rhizosphere in Turkey.
    Kum E; İnce E
    Arch Microbiol; 2021 Jul; 203(5):2431-2438. PubMed ID: 33666690
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular and biotechnological aspects of secondary metabolites in actinobacteria.
    Salwan R; Sharma V
    Microbiol Res; 2020 Jan; 231():126374. PubMed ID: 31756597
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Functional Genome Mining for Metabolites Encoded by Large Gene Clusters through Heterologous Expression of a Whole-Genome Bacterial Artificial Chromosome Library in Streptomyces spp.
    Xu M; Wang Y; Zhao Z; Gao G; Huang SX; Kang Q; He X; Lin S; Pang X; Deng Z; Tao M
    Appl Environ Microbiol; 2016 Oct; 82(19):5795-805. PubMed ID: 27451447
    [TBL] [Abstract][Full Text] [Related]  

  • 14. iPRESTO: Automated discovery of biosynthetic sub-clusters linked to specific natural product substructures.
    Louwen JJR; Kautsar SA; van der Burg S; Medema MH; van der Hooft JJJ
    PLoS Comput Biol; 2023 Feb; 19(2):e1010462. PubMed ID: 36758069
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters.
    Witjes L; Kooke R; van der Hooft JJJ; de Vos RCH; Keurentjes JJB; Medema MH; Nijveen H
    BMC Res Notes; 2019 Apr; 12(1):194. PubMed ID: 30940198
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Linking biosynthetic and chemical space to accelerate microbial secondary metabolite discovery.
    Soldatou S; Eldjarn GH; Huerta-Uribe A; Rogers S; Duncan KR
    FEMS Microbiol Lett; 2019 Jul; 366(13):. PubMed ID: 31252431
    [TBL] [Abstract][Full Text] [Related]  

  • 17.
    May DS; Crnkovic CM; Krunic A; Wilson TA; Fuchs JR; Orjala JE
    ACS Chem Biol; 2020 Mar; 15(3):758-765. PubMed ID: 32083834
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics.
    Baran R; Ivanova NN; Jose N; Garcia-Pichel F; Kyrpides NC; Gugger M; Northen TR
    Mar Drugs; 2013 Sep; 11(10):3617-31. PubMed ID: 24084783
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Linking genomics and metabolomics to chart specialized metabolic diversity.
    van der Hooft JJJ; Mohimani H; Bauermeister A; Dorrestein PC; Duncan KR; Medema MH
    Chem Soc Rev; 2020 Jun; 49(11):3297-3314. PubMed ID: 32393943
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 9.