BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

261 related articles for article (PubMed ID: 36719906)

  • 41. An ATAC-seq atlas of chromatin accessibility in mouse tissues.
    Liu C; Wang M; Wei X; Wu L; Xu J; Dai X; Xia J; Cheng M; Yuan Y; Zhang P; Li J; Feng T; Chen A; Zhang W; Chen F; Shang Z; Zhang X; Peters BA; Liu L
    Sci Data; 2019 May; 6(1):65. PubMed ID: 31110271
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.
    Bajic M; Maher KA; Deal RB
    Methods Mol Biol; 2018; 1675():183-201. PubMed ID: 29052193
    [TBL] [Abstract][Full Text] [Related]  

  • 43. An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants.
    Yuan C; Tang L; Lopdell T; Petrov VA; Oget-Ebrad C; Moreira GCM; Gualdrón Duarte JL; Sartelet A; Cheng Z; Salavati M; Wathes DC; Crowe MA; ; Coppieters W; Littlejohn M; Charlier C; Druet T; Georges M; Takeda H
    Genome Res; 2023 Oct; 33(10):1848-1864. PubMed ID: 37751945
    [TBL] [Abstract][Full Text] [Related]  

  • 44. An optimized ATAC-seq protocol for genome-wide mapping of active regulatory elements in primary mouse cortical neurons.
    Maor-Nof M; Shipony Z; Marinov GK; Greenleaf WJ; Gitler AD
    STAR Protoc; 2021 Dec; 2(4):100854. PubMed ID: 34647036
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Massively Parallel Profiling of Accessible Chromatin and Proteins with ASAP-Seq.
    Mimitou EP; Smibert P; Lareau CA
    Methods Mol Biol; 2023; 2611():249-267. PubMed ID: 36807072
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Interpretable single-cell transcription factor prediction based on deep learning with attention mechanism.
    Gong M; He Y; Wang M; Zhang Y; Ding C
    Comput Biol Chem; 2023 Oct; 106():107923. PubMed ID: 37598467
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Epigenetic Application of ATAC-Seq Based on Tn5 Transposase Purification Technology.
    Li W; Tim Wu U; Cheng Y; Huang Y; Mao L; Sun M; Qiu C; Zhou L; Gao L
    Genet Res (Camb); 2022; 2022():8429207. PubMed ID: 36062065
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Genome-Wide Mapping of Active Regulatory Elements Using ATAC-seq.
    Marinov GK; Shipony Z; Kundaje A; Greenleaf WJ
    Methods Mol Biol; 2023; 2611():3-19. PubMed ID: 36807060
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Protocol for bulk and single-nuclei chromatin accessibility quantification in mouse liver tissue.
    Korenfeld N; Toft NI; Dam TV; Charni-Natan M; Grøntved L; Goldstein I
    STAR Protoc; 2023 Sep; 4(3):102462. PubMed ID: 37590150
    [TBL] [Abstract][Full Text] [Related]  

  • 50. High-Resolution ATAC-Seq Analysis of Frozen Clinical Tissues.
    Cejas P; Long HW
    Methods Mol Biol; 2022; 2458():259-267. PubMed ID: 35103972
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Bibliometric review of ATAC-Seq and its application in gene expression.
    Luo L; Gribskov M; Wang S
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35255493
    [TBL] [Abstract][Full Text] [Related]  

  • 52. ATAC-pipe: general analysis of genome-wide chromatin accessibility.
    Zuo Z; Jin Y; Zhang W; Lu Y; Li B; Qu K
    Brief Bioinform; 2019 Sep; 20(5):1934-1943. PubMed ID: 29982337
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Measuring Chromatin Accessibility: ATAC-Seq.
    Sahu SK; Basu A; Tiwari VK
    Methods Mol Biol; 2021; 2351():105-121. PubMed ID: 34382186
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.
    Halstead MM; Kern C; Saelao P; Chanthavixay G; Wang Y; Delany ME; Zhou H; Ross PJ
    Sci Rep; 2020 Mar; 10(1):5230. PubMed ID: 32251359
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures.
    Rai V; Quang DX; Erdos MR; Cusanovich DA; Daza RM; Narisu N; Zou LS; Didion JP; Guan Y; Shendure J; Parker SCJ; Collins FS
    Mol Metab; 2020 Feb; 32():109-121. PubMed ID: 32029221
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Integrating ATAC-seq and RNA-seq Reveals the Dynamics of Chromatin Accessibility and Gene Expression in Apple Response to Drought.
    Wang S; He J; Deng M; Wang C; Wang R; Yan J; Luo M; Ma F; Guan Q; Xu J
    Int J Mol Sci; 2022 Sep; 23(19):. PubMed ID: 36232500
    [TBL] [Abstract][Full Text] [Related]  

  • 57. ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.
    Buenrostro JD; Wu B; Chang HY; Greenleaf WJ
    Curr Protoc Mol Biol; 2015 Jan; 109():21.29.1-21.29.9. PubMed ID: 25559105
    [TBL] [Abstract][Full Text] [Related]  

  • 58. CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis.
    Qiu X; Feit AS; Feiglin A; Xie Y; Kesten N; Taing L; Perkins J; Gu S; Li Y; Cejas P; Zhou N; Jeselsohn R; Brown M; Shirley Liu X; Long HW
    Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):652-661. PubMed ID: 34284136
    [TBL] [Abstract][Full Text] [Related]  

  • 59. MEDEA: analysis of transcription factor binding motifs in accessible chromatin.
    Mariani L; Weinand K; Gisselbrecht SS; Bulyk ML
    Genome Res; 2020 May; 30(5):736-748. PubMed ID: 32424069
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Detect accessible chromatin using ATAC-sequencing, from principle to applications.
    Sun Y; Miao N; Sun T
    Hereditas; 2019; 156():29. PubMed ID: 31427911
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 14.