BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

240 related articles for article (PubMed ID: 36723809)

  • 1. Quantitative Comparison of Multiple Chromatin Immunoprecipitation-Sequencing (ChIP-seq) Experiments with spikChIP.
    Blanco E; Ballaré C; Di Croce L; Aranda S
    Methods Mol Biol; 2023; 2624():55-72. PubMed ID: 36723809
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications.
    Grzybowski AT; Shah RN; Richter WF; Ruthenburg AJ
    Nat Protoc; 2019 Dec; 14(12):3275-3302. PubMed ID: 31723301
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SpikChIP: a novel computational methodology to compare multiple ChIP-seq using spike-in chromatin.
    Blanco E; Di Croce L; Aranda S
    NAR Genom Bioinform; 2021 Sep; 3(3):lqab064. PubMed ID: 34327329
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Bioinformatics Methods for ChIP-seq Histone Analysis.
    Servant N
    Methods Mol Biol; 2022; 2529():267-293. PubMed ID: 35733020
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protocol to apply spike-in ChIP-seq to capture massive histone acetylation in human cells.
    Wu D; Wang L; Huang H
    STAR Protoc; 2021 Sep; 2(3):100681. PubMed ID: 34337446
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.
    Ghavi-Helm Y; Zhao B; Furlong EE
    Methods Mol Biol; 2016; 1478():263-277. PubMed ID: 27730588
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Chromatin Immunoprecipitation Sequencing (ChIP-seq) for Detecting Histone Modifications and Modifiers.
    Hino S; Sato T; Nakao M
    Methods Mol Biol; 2023; 2577():55-64. PubMed ID: 36173565
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Chromatin Preparation and Chromatin Immuno-precipitation from Drosophila Embryos.
    Löser E; Latreille D; Iovino N
    Methods Mol Biol; 2016; 1480():23-36. PubMed ID: 27659972
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Quantitative ChIP-Seq normalization reveals global modulation of the epigenome.
    Orlando DA; Chen MW; Brown VE; Solanki S; Choi YJ; Olson ER; Fritz CC; Bradner JE; Guenther MG
    Cell Rep; 2014 Nov; 9(3):1163-70. PubMed ID: 25437568
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Software for rapid time dependent ChIP-sequencing analysis (TDCA).
    Myschyshyn M; Farren-Dai M; Chuang TJ; Vocadlo D
    BMC Bioinformatics; 2017 Nov; 18(1):521. PubMed ID: 29178831
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Unified Analysis of Multiple ChIP-Seq Datasets.
    Ma G; Babarinde IA; Zhuang Q; Hutchins AP
    Methods Mol Biol; 2021; 2198():451-465. PubMed ID: 32822050
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Chromatin Immunoprecipitation and High-Throughput Sequencing (ChIP-Seq): Tips and Tricks Regarding the Laboratory Protocol and Initial Downstream Data Analysis.
    Patten DK; Corleone G; Magnani L
    Methods Mol Biol; 2018; 1767():271-288. PubMed ID: 29524141
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Profiling Histone Methylation in Low Numbers of Cells.
    Brind'Amour J; Lorincz MC
    Methods Mol Biol; 2022; 2529():229-251. PubMed ID: 35733018
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Commercial ChIP-Seq Library Preparation Kits Performed Differently for Different Classes of Protein Targets.
    Simper MS; Coletta LD; Gaddis S; Lin K; Mikulec CD; Takata T; Tomida MW; Zhang D; Tang DG; Estecio MR; Shen J; Lu Y
    J Biomol Tech; 2022 Oct; 33(3):. PubMed ID: 36910579
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.
    Ho JW; Bishop E; Karchenko PV; Nègre N; White KP; Park PJ
    BMC Genomics; 2011 Feb; 12():134. PubMed ID: 21356108
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Greenscreen: A simple method to remove artifactual signals and enrich for true peaks in genomic datasets including ChIP-seq data.
    Klasfeld S; Roulé T; Wagner D
    Plant Cell; 2022 Nov; 34(12):4795-4815. PubMed ID: 36124976
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An Alternative Approach to ChIP-Seq Normalization Enables Detection of Genome-Wide Changes in Histone H3 Lysine 27 Trimethylation upon EZH2 Inhibition.
    Egan B; Yuan CC; Craske ML; Labhart P; Guler GD; Arnott D; Maile TM; Busby J; Henry C; Kelly TK; Tindell CA; Jhunjhunwala S; Zhao F; Hatton C; Bryant BM; Classon M; Trojer P
    PLoS One; 2016; 11(11):e0166438. PubMed ID: 27875550
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Analyzing histone ChIP-seq data with a bin-based probability of being signal.
    Hecht V; Dong K; Rajesh S; Shpilker P; Wekhande S; Shoresh N
    PLoS Comput Biol; 2023 Oct; 19(10):e1011568. PubMed ID: 37862349
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Analysis of Myc Chromatin Binding by Calibrated ChIP-Seq Approach.
    Cameron DP; Kuzin V; Baranello L
    Methods Mol Biol; 2021; 2318():161-185. PubMed ID: 34019290
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Monitoring Chromatin Regulation in Planarians Using Chromatin Immunoprecipitation Followed by Sequencing (ChIP-seq).
    Sridhar D; Aboobaker A
    Methods Mol Biol; 2022; 2450():529-547. PubMed ID: 35359327
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.