252 related articles for article (PubMed ID: 36723817)
1. Nanopore Direct RNA Sequencing Data Processing and Analysis Using MasterOfPores.
Cozzuto L; Delgado-Tejedor A; Hermoso Pulido T; Novoa EM; Ponomarenko J
Methods Mol Biol; 2023; 2624():185-205. PubMed ID: 36723817
[TBL] [Abstract][Full Text] [Related]
2. MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets.
Cozzuto L; Liu H; Pryszcz LP; Pulido TH; Delgado-Tejedor A; Ponomarenko J; Novoa EM
Front Genet; 2020; 11():211. PubMed ID: 32256520
[TBL] [Abstract][Full Text] [Related]
3. RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data.
Neumann D; Reddy ASN; Ben-Hur A
BMC Bioinformatics; 2022 Apr; 23(1):142. PubMed ID: 35443610
[TBL] [Abstract][Full Text] [Related]
4. Sequoia: A Framework for Visual Analysis of RNA Modifications from Direct RNA Sequencing Data.
Koonchanok R; Daulatabad SV; Reda K; Janga SC
Methods Mol Biol; 2023; 2624():127-138. PubMed ID: 36723813
[TBL] [Abstract][Full Text] [Related]
5. Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets.
Koonchanok R; Daulatabad SV; Mir Q; Reda K; Janga SC
BMC Genomics; 2021 Jul; 22(1):513. PubMed ID: 34233619
[TBL] [Abstract][Full Text] [Related]
6. Penguin: A tool for predicting pseudouridine sites in direct RNA nanopore sequencing data.
Hassan D; Acevedo D; Daulatabad SV; Mir Q; Janga SC
Methods; 2022 Jul; 203():478-487. PubMed ID: 35182749
[TBL] [Abstract][Full Text] [Related]
7. Beyond sequencing: machine learning algorithms extract biology hidden in Nanopore signal data.
Wan YK; Hendra C; Pratanwanich PN; Göke J
Trends Genet; 2022 Mar; 38(3):246-257. PubMed ID: 34711425
[TBL] [Abstract][Full Text] [Related]
8. NanoCLUST: a species-level analysis of 16S rRNA nanopore sequencing data.
Rodríguez-Pérez H; Ciuffreda L; Flores C
Bioinformatics; 2021 Jul; 37(11):1600-1601. PubMed ID: 33079990
[TBL] [Abstract][Full Text] [Related]
9. Accelerated nanopore basecalling with SLOW5 data format.
Samarakoon H; Ferguson JM; Gamaarachchi H; Deveson IW
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37252813
[TBL] [Abstract][Full Text] [Related]
10. PyPore: a python toolbox for nanopore sequencing data handling.
Semeraro R; Magi A
Bioinformatics; 2019 Nov; 35(21):4445-4447. PubMed ID: 30993318
[TBL] [Abstract][Full Text] [Related]
11. Sequencing accuracy and systematic errors of nanopore direct RNA sequencing.
Liu-Wei W; van der Toorn W; Bohn P; Hölzer M; Smyth RP; von Kleist M
BMC Genomics; 2024 May; 25(1):528. PubMed ID: 38807060
[TBL] [Abstract][Full Text] [Related]
12. Direct Sequencing of RNA and RNA Modification Identification Using Nanopore.
Wongsurawat T; Jenjaroenpun P; Nookaew I
Methods Mol Biol; 2022; 2477():71-77. PubMed ID: 35524112
[TBL] [Abstract][Full Text] [Related]
13. BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files.
Payne A; Holmes N; Rakyan V; Loose M
Bioinformatics; 2019 Jul; 35(13):2193-2198. PubMed ID: 30462145
[TBL] [Abstract][Full Text] [Related]
14. VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing.
Kim K; Park K; Lee S; Baek SH; Lim TH; Kim J; Manavalan B; Song JW; Kim WK
Bioinformatics; 2023 May; 39(5):. PubMed ID: 37129547
[TBL] [Abstract][Full Text] [Related]
15. Icarust, a real-time simulator for Oxford Nanopore adaptive sampling.
Munro R; Wibowo S; Payne A; Loose M
Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38478392
[TBL] [Abstract][Full Text] [Related]
16. Transcriptome-Wide Analysis of mRNA Adenylation Status in Yeast Using Nanopore Sequencing.
Krawczyk PS; Tudek A; Mroczek S; Dziembowski A
Methods Mol Biol; 2024; 2723():193-214. PubMed ID: 37824072
[TBL] [Abstract][Full Text] [Related]
17. Simulation of nanopore sequencing signal data with tunable parameters.
Gamaarachchi H; Ferguson JM; Samarakoon H; Liyanage K; Deveson IW
Genome Res; 2024 Jun; 34(5):778-783. PubMed ID: 38692839
[TBL] [Abstract][Full Text] [Related]
18. Transcript Isoform-Specific Estimation of Poly(A) Tail Length by Nanopore Sequencing of Native RNA.
Niazi AM; Krause M; Valen E
Methods Mol Biol; 2021; 2284():543-567. PubMed ID: 33835463
[TBL] [Abstract][Full Text] [Related]
19. Using Nanocompore to Identify RNA Modifications from Direct RNA Nanopore Sequencing Data.
Mulroney L; Birney E; Leonardi T; Nicassio F
Curr Protoc; 2023 Feb; 3(2):e683. PubMed ID: 36840709
[TBL] [Abstract][Full Text] [Related]
20. EpiNano: Detection of m
Liu H; Begik O; Novoa EM
Methods Mol Biol; 2021; 2298():31-52. PubMed ID: 34085237
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
