215 related articles for article (PubMed ID: 36744907)
21. ProtVista: visualization of protein sequence annotations.
Watkins X; Garcia LJ; Pundir S; Martin MJ;
Bioinformatics; 2017 Jul; 33(13):2040-2041. PubMed ID: 28334231
[TBL] [Abstract][Full Text] [Related]
22. jmzTab: a java interface to the mzTab data standard.
Xu QW; Griss J; Wang R; Jones AR; Hermjakob H; Vizcaíno JA
Proteomics; 2014 Jun; 14(11):1328-32. PubMed ID: 24659499
[TBL] [Abstract][Full Text] [Related]
23. CureSCi Metadata Catalog-Making sickle cell studies findable.
Pan H; Ives C; Mandal M; Qin Y; Hendershot T; Popovic J; Brambilla D; Stratford J; Treadwell M; Wu X; Kroner B
PLoS One; 2022; 17(12):e0256248. PubMed ID: 36508412
[TBL] [Abstract][Full Text] [Related]
24. PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model.
Glicksberg BS; Oskotsky B; Thangaraj PM; Giangreco N; Badgeley MA; Johnson KW; Datta D; Rudrapatna VA; Rappoport N; Shervey MM; Miotto R; Goldstein TC; Rutenberg E; Frazier R; Lee N; Israni S; Larsen R; Percha B; Li L; Dudley JT; Tatonetti NP; Butte AJ
Bioinformatics; 2019 Nov; 35(21):4515-4518. PubMed ID: 31214700
[TBL] [Abstract][Full Text] [Related]
25. AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge.
Voytik E; Bludau I; Willems S; Hansen FM; Brunner AD; Strauss MT; Mann M
Bioinformatics; 2022 Jan; 38(3):849-852. PubMed ID: 34586352
[TBL] [Abstract][Full Text] [Related]
26. Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Mayer G; Müller W; Schork K; Uszkoreit J; Weidemann A; Wittig U; Rey M; Quast C; Felden J; Glöckner FO; Lange M; Arend D; Beier S; Junker A; Scholz U; Schüler D; Kestler HA; Wibberg D; Pühler A; Twardziok S; Eils J; Eils R; Hoffmann S; Eisenacher M; Turewicz M
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33589928
[TBL] [Abstract][Full Text] [Related]
27. Using the PRIDE Database and ProteomeXchange for Submitting and Accessing Public Proteomics Datasets.
Jarnuczak AF; Vizcaíno JA
Curr Protoc Bioinformatics; 2017 Sep; 59():13.31.1-13.31.12. PubMed ID: 28902400
[TBL] [Abstract][Full Text] [Related]
28. BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers.
Bai J; Bandla C; Guo J; Vera Alvarez R; Bai M; Vizcaíno JA; Moreno P; Grüning B; Sallou O; Perez-Riverol Y
J Proteome Res; 2021 Apr; 20(4):2056-2061. PubMed ID: 33625229
[TBL] [Abstract][Full Text] [Related]
29. grabseqs: simple downloading of reads and metadata from multiple next-generation sequencing data repositories.
Taylor LJ; Abbas A; Bushman FD
Bioinformatics; 2020 Jun; 36(11):3607-3609. PubMed ID: 32154830
[TBL] [Abstract][Full Text] [Related]
30. sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets.
Titeca K; Meysman P; Laukens K; Martens L; Tavernier J; Eyckerman S
Bioinformatics; 2017 Jun; 33(12):1902-1904. PubMed ID: 28186257
[TBL] [Abstract][Full Text] [Related]
31. Qupe--a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
Albaum SP; Neuweger H; Fränzel B; Lange S; Mertens D; Trötschel C; Wolters D; Kalinowski J; Nattkemper TW; Goesmann A
Bioinformatics; 2009 Dec; 25(23):3128-34. PubMed ID: 19808875
[TBL] [Abstract][Full Text] [Related]
32. GlyGen data model and processing workflow.
Kahsay R; Vora J; Navelkar R; Mousavi R; Fochtman BC; Holmes X; Pattabiraman N; Ranzinger R; Mahadik R; Williamson T; Kulkarni S; Agarwal G; Martin M; Vasudev P; Garcia L; Edwards N; Zhang W; Natale DA; Ross K; Aoki-Kinoshita KF; Campbell MP; York WS; Mazumder R
Bioinformatics; 2020 Jun; 36(12):3941-3943. PubMed ID: 32324859
[TBL] [Abstract][Full Text] [Related]
33. libOmexMeta: enabling semantic annotation of models to support FAIR principles.
Welsh C; Nickerson DP; Rampadarath A; Neal ML; Sauro HM; Gennari JH
Bioinformatics; 2021 Dec; 37(24):4898-4900. PubMed ID: 34132740
[TBL] [Abstract][Full Text] [Related]
34. ELIXIR biovalidator for semantic validation of life science metadata.
Liyanage I; Burdett T; Droesbeke B; Erdos K; Fernandez R; Gray A; Haseeb M; Jupp S; Penim F; Pommier C; Rocca-Serra P; Courtot M; Coppens F
Bioinformatics; 2022 May; 38(11):3141-3142. PubMed ID: 35380605
[TBL] [Abstract][Full Text] [Related]
35. quincunx: an R package to query, download and wrangle PGS Catalog data.
Magno R; Duarte I; Maia AT
Bioinformatics; 2021 Dec; 38(1):294-296. PubMed ID: 34270693
[TBL] [Abstract][Full Text] [Related]
36. Adamant: a JSON schema-based metadata editor for research data management workflows.
Chaerony Siffa I; Schäfer J; Becker MM
F1000Res; 2022; 11():475. PubMed ID: 35707001
[TBL] [Abstract][Full Text] [Related]
37. jPOSTrepo: an international standard data repository for proteomes.
Okuda S; Watanabe Y; Moriya Y; Kawano S; Yamamoto T; Matsumoto M; Takami T; Kobayashi D; Araki N; Yoshizawa AC; Tabata T; Sugiyama N; Goto S; Ishihama Y
Nucleic Acids Res; 2017 Jan; 45(D1):D1107-D1111. PubMed ID: 27899654
[TBL] [Abstract][Full Text] [Related]
38. MS-Decipher: a user-friendly proteome database search software with an emphasis on deciphering the spectra of O-linked glycopeptides.
Mao J; Zhu H; Liu L; Fang Z; Dong M; Qin H; Ye M
Bioinformatics; 2022 Mar; 38(7):1911-1919. PubMed ID: 35020790
[TBL] [Abstract][Full Text] [Related]
39. MSPypeline: a python package for streamlined data analysis of mass spectrometry-based proteomics.
Heming S; Hansen P; Vlasov A; Schwörer F; Schaumann S; Frolovaitė P; Lehmann WD; Timmer J; Schilling M; Helm B; Klingmüller U
Bioinform Adv; 2022; 2(1):vbac004. PubMed ID: 36699356
[TBL] [Abstract][Full Text] [Related]
40. SPECTRUM - A MATLAB Toolbox for Proteoform Identification from Top-Down Proteomics Data.
Basharat AR; Iman K; Khalid MF; Anwar Z; Hussain R; Kabir HG; Tahreem M; Shahid A; Humayun M; Hayat HA; Mustafa M; Shoaib MA; Ullah Z; Zarina S; Ahmed S; Uddin E; Hamera S; Ahmad F; Chaudhary SU
Sci Rep; 2019 Aug; 9(1):11267. PubMed ID: 31375721
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
