These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
204 related articles for article (PubMed ID: 36746534)
1. A practical comparison of the next-generation sequencing platform and assemblers using yeast genome. Jeon MS; Jeong DM; Doh H; Kang HA; Jung H; Eyun SI Life Sci Alliance; 2023 Apr; 6(4):. PubMed ID: 36746534 [TBL] [Abstract][Full Text] [Related]
2. Benchmarking of long-read sequencing, assemblers and polishers for yeast genome. Zhang X; Liu CG; Yang SH; Wang X; Bai FW; Wang Z Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35511110 [TBL] [Abstract][Full Text] [Related]
3. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches. Cherukuri Y; Janga SC BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636 [TBL] [Abstract][Full Text] [Related]
4. Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses. Chen Z; Erickson DL; Meng J Genomics; 2021 May; 113(3):1366-1377. PubMed ID: 33716184 [TBL] [Abstract][Full Text] [Related]
5. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer. Istace B; Friedrich A; d'Agata L; Faye S; Payen E; Beluche O; Caradec C; Davidas S; Cruaud C; Liti G; Lemainque A; Engelen S; Wincker P; Schacherer J; Aury JM Gigascience; 2017 Feb; 6(2):1-13. PubMed ID: 28369459 [TBL] [Abstract][Full Text] [Related]
6. Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing. Scheunert A; Dorfner M; Lingl T; Oberprieler C PLoS One; 2020; 15(3):e0226234. PubMed ID: 32208422 [TBL] [Abstract][Full Text] [Related]
7. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations. García-López R; Vázquez-Castellanos JF; Moya A Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255 [TBL] [Abstract][Full Text] [Related]
8. Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish. Johnson LK; Sahasrabudhe R; Gill JA; Roach JL; Froenicke L; Brown CT; Whitehead A Gigascience; 2020 Jun; 9(6):. PubMed ID: 32556169 [TBL] [Abstract][Full Text] [Related]
9. De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms. Giordano F; Aigrain L; Quail MA; Coupland P; Bonfield JK; Davies RM; Tischler G; Jackson DK; Keane TM; Li J; Yue JX; Liti G; Durbin R; Ning Z Sci Rep; 2017 Jun; 7(1):3935. PubMed ID: 28638050 [TBL] [Abstract][Full Text] [Related]
10. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches. Lin HH; Liao YC PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475 [TBL] [Abstract][Full Text] [Related]
11. Systematic Comparison of the Performances of Wang J; Chen K; Ren Q; Zhang Y; Liu J; Wang G; Liu A; Li Y; Liu G; Luo J; Miao W; Xiong J; Yin H; Guan G Front Cell Infect Microbiol; 2021; 11():696669. PubMed ID: 34485177 [TBL] [Abstract][Full Text] [Related]
12. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing. Goldstein S; Beka L; Graf J; Klassen JL BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323 [TBL] [Abstract][Full Text] [Related]
13. Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing. Chen Z; Erickson DL; Meng J Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271875 [TBL] [Abstract][Full Text] [Related]
14. Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes. Miyamoto M; Motooka D; Gotoh K; Imai T; Yoshitake K; Goto N; Iida T; Yasunaga T; Horii T; Arakawa K; Kasahara M; Nakamura S BMC Genomics; 2014 Aug; 15(1):699. PubMed ID: 25142801 [TBL] [Abstract][Full Text] [Related]
15. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics. Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511 [TBL] [Abstract][Full Text] [Related]
16. Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis. Baeza JA; García-De León FJ BMC Genomics; 2022 Apr; 23(1):320. PubMed ID: 35459089 [TBL] [Abstract][Full Text] [Related]
17. Benchmarking of next and third generation sequencing technologies and their associated algorithms for Gavrielatos M; Kyriakidis K; Spandidos DA; Michalopoulos I Mol Med Rep; 2021 Apr; 23(4):. PubMed ID: 33537807 [TBL] [Abstract][Full Text] [Related]
18. Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools. Derakhshani H; Bernier SP; Marko VA; Surette MG BMC Genomics; 2020 Jul; 21(1):519. PubMed ID: 32727443 [TBL] [Abstract][Full Text] [Related]
19. Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case. Wang W; Schalamun M; Morales-Suarez A; Kainer D; Schwessinger B; Lanfear R BMC Genomics; 2018 Dec; 19(1):977. PubMed ID: 30594129 [TBL] [Abstract][Full Text] [Related]