These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

117 related articles for article (PubMed ID: 36747615)

  • 1. demuxmix: Demultiplexing oligonucleotide-barcoded single-cell RNA sequencing data with regression mixture models.
    Klein HU
    bioRxiv; 2023 Jan; ():. PubMed ID: 36747615
    [TBL] [Abstract][Full Text] [Related]  

  • 2. demuxmix: demultiplexing oligonucleotide-barcoded single-cell RNA sequencing data with regression mixture models.
    Klein HU
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37527018
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Benchmarking single-cell hashtag oligo demultiplexing methods.
    Howitt G; Feng Y; Tobar L; Vassiliadis D; Hickey P; Dawson MA; Ranganathan S; Shanthikumar S; Neeland M; Maksimovic J; Oshlack A
    NAR Genom Bioinform; 2023 Dec; 5(4):lqad086. PubMed ID: 37829177
    [TBL] [Abstract][Full Text] [Related]  

  • 4. scDemultiplex: An iterative beta-binomial model-based method for accurate demultiplexing with hashtag oligos.
    Huang LC; Stolze LK; Chen HC; Gelbard A; Shyr Y; Liu Q; Sheng Q
    Comput Struct Biotechnol J; 2023; 21():4044-4055. PubMed ID: 37664174
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BFF and cellhashR: analysis tools for accurate demultiplexing of cell hashing data.
    Boggy GJ; McElfresh GW; Mahyari E; Ventura AB; Hansen SG; Picker LJ; Bimber BN
    Bioinformatics; 2022 May; 38(10):2791-2801. PubMed ID: 35561167
    [TBL] [Abstract][Full Text] [Related]  

  • 6. BarWare: efficient software tools for barcoded single-cell genomics.
    Swanson E; Reading J; Graybuck LT; Skene PJ
    BMC Bioinformatics; 2022 Mar; 23(1):106. PubMed ID: 35346022
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference.
    Huang Y; McCarthy DJ; Stegle O
    Genome Biol; 2019 Dec; 20(1):273. PubMed ID: 31836005
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design.
    Weber LM; Hippen AA; Hickey PF; Berrett KC; Gertz J; Doherty JA; Greene CS; Hicks SC
    Gigascience; 2021 Sep; 10(9):. PubMed ID: 34553212
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods.
    Neavin D; Senabouth A; Arora H; Lee JTH; Ripoll-Cladellas A; ; Franke L; Prabhakar S; Ye CJ; McCarthy DJ; Melé M; Hemberg M; Powell JE
    Genome Biol; 2024 Apr; 25(1):94. PubMed ID: 38622708
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Demultiplexing of single-cell RNA-sequencing data using interindividual variation in gene expression.
    Nassiri I; Kwok AJ; Bhandari A; Bull KR; Garner LC; Klenerman P; Webber C; Parkkinen L; Lee AW; Wu Y; Fairfax B; Knight JC; Buck D; Piazza P
    Bioinform Adv; 2024; 4(1):vbae085. PubMed ID: 38911824
    [TBL] [Abstract][Full Text] [Related]  

  • 11. scSNPdemux: a sensitive demultiplexing pipeline using single nucleotide polymorphisms for improved pooled single-cell RNA sequencing analysis.
    Wong JKL; Jassowicz L; Herold-Mende C; Seiffert M; Mallm JP; Lichter P; Zapatka M
    BMC Bioinformatics; 2023 Aug; 24(1):326. PubMed ID: 37653401
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Low-input Nucleus Isolation and Multiplexing with Barcoded Antibodies of Mouse Sympathetic Ganglia for Single-nucleus RNA Sequencing.
    Ge Y; van Roon L; Chen HS; Methorst R; Paton M; DeRuiter MC; Kielbasa SM; Jongbloed MRM
    J Vis Exp; 2022 Mar; (181):. PubMed ID: 35404341
    [TBL] [Abstract][Full Text] [Related]  

  • 13. bayNorm: Bayesian gene expression recovery, imputation and normalization for single-cell RNA-sequencing data.
    Tang W; Bertaux F; Thomas P; Stefanelli C; Saint M; Marguerat S; Shahrezaei V
    Bioinformatics; 2020 Feb; 36(4):1174-1181. PubMed ID: 31584606
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation of genetic demultiplexing of single-cell sequencing data from model species.
    Cardiello JF; Joven Araus A; Giatrellis S; Helsens C; Simon A; Leigh ND
    Life Sci Alliance; 2023 Aug; 6(8):. PubMed ID: 37197983
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A hybrid demultiplexing strategy that improves performance and robustness of cell hashing.
    Li L; Sun J; Fu Y; Changrob S; McGrath JJC; Wilson PC
    Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38828640
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A hybrid demultiplexing strategy that improves performance and robustness of cell hashing.
    Li L; Sun J; Fu Y; Changrob S; McGrath JJC; Wilson PC
    bioRxiv; 2023 Nov; ():. PubMed ID: 37066221
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing.
    Xin H; Lian Q; Jiang Y; Luo J; Wang X; Erb C; Xu Z; Zhang X; Heidrich-O'Hare E; Yan Q; Duerr RH; Chen K; Chen W
    Genome Biol; 2020 Jul; 21(1):188. PubMed ID: 32731885
    [TBL] [Abstract][Full Text] [Related]  

  • 18. scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data.
    Wang Z; Hu J; Johnson WE; Campbell JD
    BMC Bioinformatics; 2019 May; 20(1):222. PubMed ID: 31046658
    [TBL] [Abstract][Full Text] [Related]  

  • 19. mitoSplitter: A mitochondrial variants-based method for efficient demultiplexing of pooled single-cell RNA-seq.
    Lin X; Chen Y; Lin L; Yin K; Cheng R; Lin X; Wang X; Guo Y; Wu Z; Zhang Y; Li J; Yang C; Song J
    Proc Natl Acad Sci U S A; 2023 Sep; 120(39):e2307722120. PubMed ID: 37725654
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments.
    BinTayyash N; Georgaka S; John ST; Ahmed S; Boukouvalas A; Hensman J; Rattray M
    Bioinformatics; 2021 Nov; 37(21):3788-3795. PubMed ID: 34213536
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.