141 related articles for article (PubMed ID: 36747726)
1. Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments.
Sriworarat C; Nguyen A; Eagles NJ; Collado-Torres L; Martinowich K; Maynard KR; Hicks SC
bioRxiv; 2023 Feb; ():. PubMed ID: 36747726
[TBL] [Abstract][Full Text] [Related]
2. Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments.
Sriworarat C; Nguyen A; Eagles NJ; Collado-Torres L; Martinowich K; Maynard KR; Hicks SC
Biol Imaging; 2023; 3():e15. PubMed ID: 38487694
[TBL] [Abstract][Full Text] [Related]
3. spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data.
Pardo B; Spangler A; Weber LM; Page SC; Hicks SC; Jaffe AE; Martinowich K; Maynard KR; Collado-Torres L
BMC Genomics; 2022 Jun; 23(1):434. PubMed ID: 35689177
[TBL] [Abstract][Full Text] [Related]
4. VT3D: a visualization toolbox for 3D transcriptomic data.
Guo L; Li Y; Qi Y; Huang Z; Han K; Liu X; Liu X; Xu M; Fan G
J Genet Genomics; 2023 Sep; 50(9):713-719. PubMed ID: 37054878
[TBL] [Abstract][Full Text] [Related]
5. SpatialView: an interactive web application for visualization of multiple samples in spatial transcriptomics experiments.
Mohanty C; Prasad A; Cheng L; Arkin LM; Shields BE; Drolet B; Kendziorski C
Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38444087
[TBL] [Abstract][Full Text] [Related]
6. Semla: a versatile toolkit for spatially resolved transcriptomics analysis and visualization.
Larsson L; Franzén L; Ståhl PL; Lundeberg J
Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37846051
[TBL] [Abstract][Full Text] [Related]
7. TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data.
Pielawski N; Andersson A; Avenel C; Behanova A; Chelebian E; Klemm A; Nysjö F; Solorzano L; Wählby C
Heliyon; 2023 May; 9(5):e15306. PubMed ID: 37131430
[TBL] [Abstract][Full Text] [Related]
8. Seamless integration of image and molecular analysis for spatial transcriptomics workflows.
Bergenstråhle J; Larsson L; Lundeberg J
BMC Genomics; 2020 Jul; 21(1):482. PubMed ID: 32664861
[TBL] [Abstract][Full Text] [Related]
9. ScopeViewer: A Browser-Based Solution for Visualizing Spatial Transcriptomics Data.
Luo D; Robertson S; Zhan Y; Rong R; Wang S; Jiang X; Yang S; Palmer S; Jia L; Li Q; Xiao G; Zhan X
bioRxiv; 2023 Jul; ():. PubMed ID: 37546786
[TBL] [Abstract][Full Text] [Related]
10.
Tippani M; Divecha HR; Catallini JL; Kwon SH; Weber LM; Spangler A; Jaffe AE; Hyde TM; Kleinman JE; Hicks SC; Martinowich K; Collado-Torres L; Page SC; Maynard KR
Biol Imaging; 2023; 3():e23. PubMed ID: 38510173
[TBL] [Abstract][Full Text] [Related]
11. ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets.
Fernández Navarro J; Lundeberg J; Ståhl PL
Bioinformatics; 2019 Mar; 35(6):1058-1060. PubMed ID: 30875427
[TBL] [Abstract][Full Text] [Related]
12. Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data.
Miller BF; Huang F; Atta L; Sahoo A; Fan J
Nat Commun; 2022 Apr; 13(1):2339. PubMed ID: 35487922
[TBL] [Abstract][Full Text] [Related]
13. SSAM-lite: A Light-Weight Web App for Rapid Analysis of Spatially Resolved Transcriptomics Data.
Tiesmeyer S; Sahay S; Müller-Bötticher N; Eils R; Mackowiak SD; Ishaque N
Front Genet; 2022; 13():785877. PubMed ID: 35295943
[TBL] [Abstract][Full Text] [Related]
14. Region-specific denoising identifies spatial co-expression patterns and intra-tissue heterogeneity in spatially resolved transcriptomics data.
Wang L; Maletic-Savatic M; Liu Z
Nat Commun; 2022 Nov; 13(1):6912. PubMed ID: 36376296
[TBL] [Abstract][Full Text] [Related]
15. Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning.
Chang Y; He F; Wang J; Chen S; Li J; Liu J; Yu Y; Su L; Ma A; Allen C; Lin Y; Sun S; Liu B; Javier Otero J; Chung D; Fu H; Li Z; Xu D; Ma Q
Comput Struct Biotechnol J; 2022; 20():4600-4617. PubMed ID: 36090815
[TBL] [Abstract][Full Text] [Related]
16. Sparcle: assigning transcripts to cells in multiplexed images.
Prabhakaran S
Bioinform Adv; 2022; 2(1):vbac048. PubMed ID: 36699413
[TBL] [Abstract][Full Text] [Related]
17. BioViz
Raveendran K; Freese NH; Kintali C; Tiwari S; Bole P; Dias C; Loraine AE
Front Bioinform; 2022; 2():764619. PubMed ID: 36304269
[TBL] [Abstract][Full Text] [Related]
18. SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.
Righelli D; Weber LM; Crowell HL; Pardo B; Collado-Torres L; Ghazanfar S; Lun ATL; Hicks SC; Risso D
Bioinformatics; 2022 May; 38(11):3128-3131. PubMed ID: 35482478
[TBL] [Abstract][Full Text] [Related]
19. Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain.
Zhang Y; Miller JA; Park J; Lelieveldt BP; Long B; Abdelaal T; Aevermann BD; Biancalani T; Comiter C; Dzyubachyk O; Eggermont J; Langseth CM; Petukhov V; Scalia G; Vaishnav ED; Zhao Y; Lein ES; Scheuermann RH
Sci Rep; 2023 Jun; 13(1):9567. PubMed ID: 37311768
[TBL] [Abstract][Full Text] [Related]
20. IMAGE-IN: Interactive web-based multidimensional 3D visualizer for multi-modal microscopy images.
Gupta Y; Costa C; Pinho E; A Bastião Silva L; Heintzmann R
PLoS One; 2022; 17(12):e0279825. PubMed ID: 36584152
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]