These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
142 related articles for article (PubMed ID: 36753924)
1. Sequence and structure alignments in post-AlphaFold era. Rajapaksa S; Konagurthu AS; Lesk AM Curr Opin Struct Biol; 2023 Apr; 79():102539. PubMed ID: 36753924 [TBL] [Abstract][Full Text] [Related]
2. Protein structure prediction improves the quality of amino-acid sequence alignment. Lesk AM; Konagurthu AS Proteins; 2022 Dec; 90(12):2144-2147. PubMed ID: 35754316 [TBL] [Abstract][Full Text] [Related]
3. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases. Wallqvist A; Fukunishi Y; Murphy LR; Fadel A; Levy RM Bioinformatics; 2000 Nov; 16(11):988-1002. PubMed ID: 11159310 [TBL] [Abstract][Full Text] [Related]
4. How reliably can we predict the reliability of protein structure predictions? Miklós I; Novák A; Dombai B; Hein J BMC Bioinformatics; 2008 Mar; 9():137. PubMed ID: 18315874 [TBL] [Abstract][Full Text] [Related]
5. Accuracy of structure-based sequence alignment of automatic methods. Kim C; Lee B BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866 [TBL] [Abstract][Full Text] [Related]
6. Large-scale comparison of protein sequence alignment algorithms with structure alignments. Sauder JM; Arthur JW; Dunbrack RL Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826 [TBL] [Abstract][Full Text] [Related]
7. Aligning protein sequences with predicted secondary structure. Kececioglu J; Kim E; Wheeler T J Comput Biol; 2010 Mar; 17(3):561-80. PubMed ID: 20377464 [TBL] [Abstract][Full Text] [Related]
8. DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment. Wright ES BMC Bioinformatics; 2015 Oct; 16():322. PubMed ID: 26445311 [TBL] [Abstract][Full Text] [Related]
9. Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins. Balaji S; Srinivasan N Protein Eng; 2001 Apr; 14(4):219-26. PubMed ID: 11391013 [TBL] [Abstract][Full Text] [Related]
11. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH. Teichert F; Minning J; Bastolla U; Porto M BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364 [TBL] [Abstract][Full Text] [Related]
12. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments. Gotoh O J Mol Biol; 1996 Dec; 264(4):823-38. PubMed ID: 8980688 [TBL] [Abstract][Full Text] [Related]
13. Protein structure search to support the development of protein structure prediction methods. Ayoub R; Lee Y Proteins; 2021 Jun; 89(6):648-658. PubMed ID: 33458852 [TBL] [Abstract][Full Text] [Related]
14. PROMALS: towards accurate multiple sequence alignments of distantly related proteins. Pei J; Grishin NV Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437 [TBL] [Abstract][Full Text] [Related]
15. Alignment of protein sequences by their profiles. Marti-Renom MA; Madhusudhan MS; Sali A Protein Sci; 2004 Apr; 13(4):1071-87. PubMed ID: 15044736 [TBL] [Abstract][Full Text] [Related]
16. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction. Scheeff ED; Bourne PE BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830 [TBL] [Abstract][Full Text] [Related]
17. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions. Huang YM; Bystroff C Bioinformatics; 2006 Feb; 22(4):413-22. PubMed ID: 16352653 [TBL] [Abstract][Full Text] [Related]
18. Protein embedding based alignment. Iovino BG; Ye Y BMC Bioinformatics; 2024 Feb; 25(1):85. PubMed ID: 38413857 [TBL] [Abstract][Full Text] [Related]
19. An approach to improving multiple alignments of protein sequences using predicted secondary structure. Jennings AJ; Edge CM; Sternberg MJ Protein Eng; 2001 Apr; 14(4):227-31. PubMed ID: 11391014 [TBL] [Abstract][Full Text] [Related]
20. Alignment of helical membrane protein sequences using AlignMe. Stamm M; Staritzbichler R; Khafizov K; Forrest LR PLoS One; 2013; 8(3):e57731. PubMed ID: 23469223 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]