245 related articles for article (PubMed ID: 36769074)
1. Exploring AlphaFold2's Performance on Predicting Amino Acid Side-Chain Conformations and Its Utility in Crystal Structure Determination of B318L Protein.
Zhao H; Zhang H; She Z; Gao Z; Wang Q; Geng Z; Dong Y
Int J Mol Sci; 2023 Feb; 24(3):. PubMed ID: 36769074
[TBL] [Abstract][Full Text] [Related]
2. A Perspective on the Prospective Use of AI in Protein Structure Prediction.
Versini R; Sritharan S; Aykac Fas B; Tubiana T; Aimeur SZ; Henri J; Erard M; Nüsse O; Andreani J; Baaden M; Fuchs P; Galochkina T; Chatzigoulas A; Cournia Z; Santuz H; Sacquin-Mora S; Taly A
J Chem Inf Model; 2024 Jan; 64(1):26-41. PubMed ID: 38124369
[TBL] [Abstract][Full Text] [Related]
3. Assessment of AlphaFold2 for Human Proteins via Residue Solvent Exposure.
Bæk KT; Kepp KP
J Chem Inf Model; 2022 Jul; 62(14):3391-3400. PubMed ID: 35785970
[TBL] [Abstract][Full Text] [Related]
4. Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data.
Li EH; Spaman LE; Tejero R; Janet Huang Y; Ramelot TA; Fraga KJ; Prestegard JH; Kennedy MA; Montelione GT
J Magn Reson; 2023 Jul; 352():107481. PubMed ID: 37257257
[TBL] [Abstract][Full Text] [Related]
5. Exploring the Druggable Conformational Space of Protein Kinases Using AI-Generated Structures.
Herrington NB; Stein D; Li YC; Pandey G; Schlessinger A
bioRxiv; 2023 Sep; ():. PubMed ID: 37693436
[TBL] [Abstract][Full Text] [Related]
6. AlphaFold2 and its applications in the fields of biology and medicine.
Yang Z; Zeng X; Zhao Y; Chen R
Signal Transduct Target Ther; 2023 Mar; 8(1):115. PubMed ID: 36918529
[TBL] [Abstract][Full Text] [Related]
7. Digging into the 3D Structure Predictions of AlphaFold2 with Low Confidence: Disorder and Beyond.
Bruley A; Mornon JP; Duprat E; Callebaut I
Biomolecules; 2022 Oct; 12(10):. PubMed ID: 36291675
[TBL] [Abstract][Full Text] [Related]
8. AlphaFold2 has more to learn about protein energy landscapes.
Chakravarty D; Schafer JW; Chen EA; Thole JR; Porter LL
bioRxiv; 2023 Dec; ():. PubMed ID: 38168383
[TBL] [Abstract][Full Text] [Related]
9. How accurately can one predict drug binding modes using AlphaFold models?
Karelina M; Noh JJ; Dror RO
Elife; 2023 Dec; 12():. PubMed ID: 38131311
[TBL] [Abstract][Full Text] [Related]
10. A structural biology community assessment of AlphaFold2 applications.
Akdel M; Pires DEV; Pardo EP; Jänes J; Zalevsky AO; Mészáros B; Bryant P; Good LL; Laskowski RA; Pozzati G; Shenoy A; Zhu W; Kundrotas P; Serra VR; Rodrigues CHM; Dunham AS; Burke D; Borkakoti N; Velankar S; Frost A; Basquin J; Lindorff-Larsen K; Bateman A; Kajava AV; Valencia A; Ovchinnikov S; Durairaj J; Ascher DB; Thornton JM; Davey NE; Stein A; Elofsson A; Croll TI; Beltrao P
Nat Struct Mol Biol; 2022 Nov; 29(11):1056-1067. PubMed ID: 36344848
[TBL] [Abstract][Full Text] [Related]
11. Overview of AlphaFold2 and breakthroughs in overcoming its limitations.
Wang L; Wen Z; Liu SW; Zhang L; Finley C; Lee HJ; Fan HS
Comput Biol Med; 2024 Jun; 176():108620. PubMed ID: 38761500
[TBL] [Abstract][Full Text] [Related]
12. AlphaFold2 models indicate that protein sequence determines both structure and dynamics.
Guo HB; Perminov A; Bekele S; Kedziora G; Farajollahi S; Varaljay V; Hinkle K; Molinero V; Meister K; Hung C; Dennis P; Kelley-Loughnane N; Berry R
Sci Rep; 2022 Jun; 12(1):10696. PubMed ID: 35739160
[TBL] [Abstract][Full Text] [Related]
13. Sampling alternative conformational states of transporters and receptors with AlphaFold2.
Del Alamo D; Sala D; Mchaourab HS; Meiler J
Elife; 2022 Mar; 11():. PubMed ID: 35238773
[TBL] [Abstract][Full Text] [Related]
14. Enhanced antibody-antigen structure prediction from molecular docking using AlphaFold2.
Gaudreault F; Corbeil CR; Sulea T
Sci Rep; 2023 Sep; 13(1):15107. PubMed ID: 37704686
[TBL] [Abstract][Full Text] [Related]
15. De novo protein design by inversion of the AlphaFold structure prediction network.
Goverde CA; Wolf B; Khakzad H; Rosset S; Correia BE
Protein Sci; 2023 Jun; 32(6):e4653. PubMed ID: 37165539
[TBL] [Abstract][Full Text] [Related]
16. AlphaFold2 structures guide prospective ligand discovery.
Lyu J; Kapolka N; Gumpper R; Alon A; Wang L; Jain MK; Barros-Álvarez X; Sakamoto K; Kim Y; DiBerto J; Kim K; Glenn IS; Tummino TA; Huang S; Irwin JJ; Tarkhanova OO; Moroz Y; Skiniotis G; Kruse AC; Shoichet BK; Roth BL
Science; 2024 Jun; 384(6702):eadn6354. PubMed ID: 38753765
[TBL] [Abstract][Full Text] [Related]
17. How AlphaFold2 shaped the structural coverage of the human transmembrane proteome.
Jambrich MA; Tusnady GE; Dobson L
Sci Rep; 2023 Nov; 13(1):20283. PubMed ID: 37985809
[TBL] [Abstract][Full Text] [Related]
18. Tertiary structure assessment at CASP15.
Simpkin AJ; Mesdaghi S; Sánchez Rodríguez F; Elliott L; Murphy DL; Kryshtafovych A; Keegan RM; Rigden DJ
Proteins; 2023 Dec; 91(12):1616-1635. PubMed ID: 37746927
[TBL] [Abstract][Full Text] [Related]
19. Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery.
Zhang Y; Vass M; Shi D; Abualrous E; Chambers JM; Chopra N; Higgs C; Kasavajhala K; Li H; Nandekar P; Sato H; Miller EB; Repasky MP; Jerome SV
J Chem Inf Model; 2023 Mar; 63(6):1656-1667. PubMed ID: 36897766
[TBL] [Abstract][Full Text] [Related]
20. AlphaFold2 fails to predict protein fold switching.
Chakravarty D; Porter LL
Protein Sci; 2022 Jun; 31(6):e4353. PubMed ID: 35634782
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]