BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 36789293)

  • 1. DISCO+QR: rooting species trees in the presence of GDL and ILS.
    Willson J; Tabatabaee Y; Liu B; Warnow T
    Bioinform Adv; 2023; 3(1):vbad015. PubMed ID: 36789293
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Quintet Rooting: rooting species trees under the multi-species coalescent model.
    Tabatabaee Y; Sarker K; Warnow T
    Bioinformatics; 2022 Jun; 38(Suppl 1):i109-i117. PubMed ID: 35758805
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DISCO: Species Tree Inference using Multicopy Gene Family Tree Decomposition.
    Willson J; Roddur MS; Liu B; Zaharias P; Warnow T
    Syst Biol; 2022 Apr; 71(3):610-629. PubMed ID: 34450658
    [TBL] [Abstract][Full Text] [Related]  

  • 4. QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the Coalescent.
    Tabatabaee Y; Roch S; Warnow T
    J Comput Biol; 2023 Nov; 30(11):1146-1181. PubMed ID: 37902986
    [No Abstract]   [Full Text] [Related]  

  • 5. Non-parametric correction of estimated gene trees using TRACTION.
    Christensen S; Molloy EK; Vachaspati P; Yammanuru A; Warnow T
    Algorithms Mol Biol; 2020; 15():1. PubMed ID: 31911812
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss.
    Legried B; Molloy EK; Warnow T; Roch S
    J Comput Biol; 2021 May; 28(5):452-468. PubMed ID: 33325781
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Weighted ASTRID: fast and accurate species trees from weighted internode distances.
    Liu B; Warnow T
    Algorithms Mol Biol; 2023 Jul; 18(1):6. PubMed ID: 37468904
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting.
    Mirarab S; Bayzid MS; Warnow T
    Syst Biol; 2016 May; 65(3):366-80. PubMed ID: 25164915
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models.
    Molloy EK; Warnow T
    Bioinformatics; 2020 Jul; 36(Suppl_1):i57-i65. PubMed ID: 32657396
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ASTRAL: genome-scale coalescent-based species tree estimation.
    Mirarab S; Reaz R; Bayzid MS; Zimmermann T; Swenson MS; Warnow T
    Bioinformatics; 2014 Sep; 30(17):i541-8. PubMed ID: 25161245
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Species Tree Estimation from Gene Trees by Minimizing Deep Coalescence and Maximizing Quartet Consistency: A Comparative Study and the Presence of Pseudo Species Tree Terraces.
    Farah IT; Islam M; Zinat KT; Rahman AH; Bayzid S
    Syst Biol; 2021 Oct; 70(6):1213-1231. PubMed ID: 33844023
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Asteroid: a new algorithm to infer species trees from gene trees under high proportions of missing data.
    Morel B; Williams TA; Stamatakis A
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36576010
    [TBL] [Abstract][Full Text] [Related]  

  • 13. wQFM: highly accurate genome-scale species tree estimation from weighted quartets.
    Mahbub M; Wahab Z; Reaz R; Rahman MS; Bayzid MS
    Bioinformatics; 2021 Nov; 37(21):3734-3743. PubMed ID: 34086858
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Naive binning improves phylogenomic analyses.
    Bayzid MS; Warnow T
    Bioinformatics; 2013 Sep; 29(18):2277-84. PubMed ID: 23842808
    [TBL] [Abstract][Full Text] [Related]  

  • 15. On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation.
    Kundu S; Bansal MS
    BMC Bioinformatics; 2018 Aug; 19(Suppl 9):290. PubMed ID: 30367593
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Estimating optimal species trees from incomplete gene trees under deep coalescence.
    Bayzid MS; Warnow T
    J Comput Biol; 2012 Jun; 19(6):591-605. PubMed ID: 22697236
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Realistic Gene Transfer to Gene Duplication Ratios Identify Different Roots in the Bacterial Phylogeny Using a Tree Reconciliation Method.
    Bremer N; Knopp M; Martin WF; Tria FDK
    Life (Basel); 2022 Jul; 12(7):. PubMed ID: 35888084
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SpeciesRax: A Tool for Maximum Likelihood Species Tree Inference from Gene Family Trees under Duplication, Transfer, and Loss.
    Morel B; Schade P; Lutteropp S; Williams TA; Szöllősi GJ; Stamatakis A
    Mol Biol Evol; 2022 Feb; 39(2):. PubMed ID: 35021210
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space.
    Vachaspati P; Warnow T
    Mol Phylogenet Evol; 2018 Jul; 124():122-136. PubMed ID: 29530498
    [TBL] [Abstract][Full Text] [Related]  

  • 20. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
    Molloy EK; Warnow T
    Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.