BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 36789293)

  • 21. Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem.
    Górecki P; Eulenstein O
    BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S14. PubMed ID: 22759419
    [TBL] [Abstract][Full Text] [Related]  

  • 22. On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods.
    Roch S; Warnow T
    Syst Biol; 2015 Jul; 64(4):663-76. PubMed ID: 25813358
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Completing gene trees without species trees in sub-quadratic time.
    Mai U; Mirarab S
    Bioinformatics; 2022 Mar; 38(6):1532-1541. PubMed ID: 34978565
    [TBL] [Abstract][Full Text] [Related]  

  • 24. The Effect of Copy Number Hemiplasy on Gene Family Evolution.
    Li Q; Chan YB; Galtier N; Scornavacca C
    Syst Biol; 2024 Feb; ():. PubMed ID: 38330161
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction.
    Mai U; Sayyari E; Mirarab S
    PLoS One; 2017; 12(8):e0182238. PubMed ID: 28800608
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance.
    Chaudhary R; Burleigh JG; Fernández-Baca D
    Algorithms Mol Biol; 2013 Nov; 8(1):28. PubMed ID: 24180377
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.
    Chung Y; Ané C
    Syst Biol; 2011 May; 60(3):261-75. PubMed ID: 21368324
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Invariant transformers of Robinson and Foulds distance matrices for Convolutional Neural Network.
    Tahiri N; Veriga A; Koshkarov A; Morozov B
    J Bioinform Comput Biol; 2022 Aug; 20(4):2250012. PubMed ID: 35798684
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Quartet-based inference is statistically consistent under the unified duplication-loss-coalescence model.
    Markin A; Eulenstein O
    Bioinformatics; 2021 Nov; 37(22):4064-4074. PubMed ID: 34048529
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Species Tree Estimation and the Impact of Gene Loss Following Whole-Genome Duplication.
    Xiong H; Wang D; Shao C; Yang X; Yang J; Ma T; Davis CC; Liu L; Xi Z
    Syst Biol; 2022 Oct; 71(6):1348-1361. PubMed ID: 35689633
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Inferring phylogeny from whole genomes.
    Górecki P; Tiuryn J
    Bioinformatics; 2007 Jan; 23(2):e116-22. PubMed ID: 17237078
    [TBL] [Abstract][Full Text] [Related]  

  • 32. ASTRAL-Pro 2: ultrafast species tree reconstruction from multi-copy gene family trees.
    Zhang C; Mirarab S
    Bioinformatics; 2022 Oct; 38(21):4949-4950. PubMed ID: 36094339
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs.
    Yan Z; Smith ML; Du P; Hahn MW; Nakhleh L
    Syst Biol; 2022 Feb; 71(2):367-381. PubMed ID: 34245291
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.
    McCormack JE; Huang H; Knowles LL
    Syst Biol; 2009 Oct; 58(5):501-8. PubMed ID: 20525604
    [TBL] [Abstract][Full Text] [Related]  

  • 35. The Multilocus Multispecies Coalescent: A Flexible New Model of Gene Family Evolution.
    Li Q; Scornavacca C; Galtier N; Chan YB
    Syst Biol; 2021 Jun; 70(4):822-837. PubMed ID: 33169795
    [TBL] [Abstract][Full Text] [Related]  

  • 36. The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales.
    Cai L; Xi Z; Lemmon EM; Lemmon AR; Mast A; Buddenhagen CE; Liu L; Davis CC
    Syst Biol; 2021 Apr; 70(3):491-507. PubMed ID: 33169797
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations.
    Chan YB; Ranwez V; Scornavacca C
    J Theor Biol; 2017 Nov; 432():1-13. PubMed ID: 28801222
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Inferring rooted species trees from unrooted gene trees using approximate Bayesian computation.
    Alanzi ARA; Degnan JH
    Mol Phylogenet Evol; 2017 Nov; 116():13-24. PubMed ID: 28780022
    [TBL] [Abstract][Full Text] [Related]  

  • 39. The influence of gene flow on species tree estimation: a simulation study.
    Leaché AD; Harris RB; Rannala B; Yang Z
    Syst Biol; 2014 Jan; 63(1):17-30. PubMed ID: 23945075
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees.
    Wu YC; Rasmussen MD; Bansal MS; Kellis M
    Genome Res; 2014 Mar; 24(3):475-86. PubMed ID: 24310000
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.