These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

175 related articles for article (PubMed ID: 36789442)

  • 1. Evolutionary selection of proteins with two folds.
    Schafer JW; Porter LL
    bioRxiv; 2023 Jan; ():. PubMed ID: 36789442
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Evolutionary selection of proteins with two folds.
    Schafer JW; Porter LL
    Nat Commun; 2023 Sep; 14(1):5478. PubMed ID: 37673981
    [TBL] [Abstract][Full Text] [Related]  

  • 3. AlphaFold2 fails to predict protein fold switching.
    Chakravarty D; Porter LL
    Protein Sci; 2022 Jun; 31(6):e4353. PubMed ID: 35634782
    [TBL] [Abstract][Full Text] [Related]  

  • 4. AlphaFold2 has more to learn about protein energy landscapes.
    Chakravarty D; Schafer JW; Chen EA; Thole JR; Porter LL
    bioRxiv; 2023 Dec; ():. PubMed ID: 38168383
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Fluid protein fold space and its implications.
    Porter LL
    Bioessays; 2023 Sep; 45(9):e2300057. PubMed ID: 37431685
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Inaccurate secondary structure predictions often indicate protein fold switching.
    Mishra S; Looger LL; Porter LL
    Protein Sci; 2019 Aug; 28(8):1487-1493. PubMed ID: 31148305
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Identification of a covert evolutionary pathway between two protein folds.
    Chakravarty D; Sreenivasan S; Swint-Kruse L; Porter LL
    Nat Commun; 2023 Jun; 14(1):3177. PubMed ID: 37264049
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds.
    Sadreyev RI; Grishin NV
    BMC Struct Biol; 2006 Mar; 6():6. PubMed ID: 16549009
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Sequence clustering confounds AlphaFold2.
    Schafer JW; Chakravarty D; Chen EA; Porter LL
    bioRxiv; 2024 Jan; ():. PubMed ID: 38313252
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Coevolutionary Signals and Structure-Based Models for the Prediction of Protein Native Conformations.
    Dos Santos RN; Jiang X; Martínez L; Morcos F
    Methods Mol Biol; 2019; 1851():83-103. PubMed ID: 30298393
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ColabFold predicts alternative protein structures from single sequences, coevolution unnecessary for AF-cluster.
    Porter LL; Chakravarty D; Schafer JW; Chen EA
    bioRxiv; 2023 Nov; ():. PubMed ID: 38076792
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Delineation of plant caleosin residues critical for functional divergence, positive selection and coevolution.
    Song W; Qin Y; Zhu Y; Yin G; Wu N; Li Y; Hu Y
    BMC Evol Biol; 2014 Jun; 14():124. PubMed ID: 24913827
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Do "Newly Born" orphan proteins resemble "Never Born" proteins? A study using three deep learning algorithms.
    Liu J; Yuan R; Shao W; Wang J; Silman I; Sussman JL
    Proteins; 2023 Aug; 91(8):1097-1115. PubMed ID: 37092778
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Unsupervisedly Prompting AlphaFold2 for Accurate Few-Shot Protein Structure Prediction.
    Zhang J; Liu S; Chen M; Chu H; Wang M; Wang Z; Yu J; Ni N; Yu F; Chen D; Yang YI; Xue B; Yang L; Liu Y; Gao YQ
    J Chem Theory Comput; 2023 Nov; 19(22):8460-8471. PubMed ID: 37947474
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The role of negative selection in protein evolution revealed through the energetics of the native state ensemble.
    Hoffmann J; Wrabl JO; Hilser VJ
    Proteins; 2016 Apr; 84(4):435-47. PubMed ID: 26800099
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A sequence-based method for predicting extant fold switchers that undergo α-helix ↔ β-strand transitions.
    Mishra S; Looger LL; Porter LL
    Biopolymers; 2021 Oct; 112(10):e23471. PubMed ID: 34498740
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Metamorphic Proteins: Emergence of Dual Protein Folds from One Primary Sequence.
    Lella M; Mahalakshmi R
    Biochemistry; 2017 Jun; 56(24):2971-2984. PubMed ID: 28570055
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Many dissimilar NusG protein domains switch between α-helix and β-sheet folds.
    Porter LL; Kim AK; Rimal S; Looger LL; Majumdar A; Mensh BD; Starich MR; Strub MP
    Nat Commun; 2022 Jul; 13(1):3802. PubMed ID: 35778397
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Extant fold-switching proteins are widespread.
    Porter LL; Looger LL
    Proc Natl Acad Sci U S A; 2018 Jun; 115(23):5968-5973. PubMed ID: 29784778
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M; Yanover C
    Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.