BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

159 related articles for article (PubMed ID: 36790056)

  • 1. Generalizations of the genomic rank distance to indels.
    Pereira Zanetti JP; Peres Oliveira L; Chindelevitch L; Meidanis J
    Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36790056
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Restricted DCJ-indel model: sorting linear genomes with DCJ and indels.
    da Silva PH; Machado R; Dantas S; Braga MD
    BMC Bioinformatics; 2012; 13 Suppl 19(Suppl 19):S14. PubMed ID: 23281630
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Sorting Linear Genomes with Rearrangements and Indels.
    Braga MD; Stoye J
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(3):500-6. PubMed ID: 26357261
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genomic distance under gene substitutions.
    Braga MD; Machado R; Ribeiro LC; Stoye J
    BMC Bioinformatics; 2011 Oct; 12 Suppl 9(Suppl 9):S8. PubMed ID: 22151231
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computing the Inversion-Indel Distance.
    Willing E; Stoye J; Braga MDV
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2314-2326. PubMed ID: 32324562
    [TBL] [Abstract][Full Text] [Related]  

  • 6. On the weight of indels in genomic distances.
    Braga MD; Machado R; Ribeiro LC; Stoye J
    BMC Bioinformatics; 2011 Oct; 12 Suppl 9(Suppl 9):S13. PubMed ID: 22151784
    [TBL] [Abstract][Full Text] [Related]  

  • 7. On the inversion-indel distance.
    Willing E; Zaccaria S; Braga MD; Stoye J
    BMC Bioinformatics; 2013; 14 Suppl 15(Suppl 15):S3. PubMed ID: 24564182
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DCJ-indel and DCJ-substitution distances with distinct operation costs.
    da Silva PH; Machado R; Dantas S; Braga MD
    Algorithms Mol Biol; 2013 Jul; 8(1):21. PubMed ID: 23879938
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Double cut and join with insertions and deletions.
    Braga MD; Willing E; Stoye J
    J Comput Biol; 2011 Sep; 18(9):1167-84. PubMed ID: 21899423
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information.
    Alexandrino AO; Oliveira AR; Jean G; Fertin G; Dias U; Dias Z
    J Comput Biol; 2023 Aug; 30(8):861-876. PubMed ID: 37222724
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Reversal and Indel Distance With Intergenic Region Information.
    Alexandrino AO; Brito KL; Oliveira AR; Dias U; Dias Z
    IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(3):1628-1640. PubMed ID: 36260590
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Fast ancestral gene order reconstruction of genomes with unequal gene content.
    Feijão P; Araujo E
    BMC Bioinformatics; 2016 Nov; 17(Suppl 14):413. PubMed ID: 28185578
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Labeled Cycle Graph for Transposition and Indel Distance.
    Alexandrino AO; Oliveira AR; Dias U; Dias Z
    J Comput Biol; 2022 Mar; 29(3):243-256. PubMed ID: 34724796
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Small parsimony for natural genomes in the DCJ-indel model.
    Doerr D; Chauve C
    J Bioinform Comput Biol; 2021 Dec; 19(6):2140009. PubMed ID: 34806948
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Recombinations, chains and caps: resolving problems with the DCJ-indel model.
    Bohnenkämper L
    Algorithms Mol Biol; 2024 Feb; 19(1):8. PubMed ID: 38414060
    [TBL] [Abstract][Full Text] [Related]  

  • 16. UniMoG--a unifying framework for genomic distance calculation and sorting based on DCJ.
    Hilker R; Sickinger C; Pedersen CN; Stoye J
    Bioinformatics; 2012 Oct; 28(19):2509-11. PubMed ID: 22815356
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals.
    Heydari M; Marashi SA; Tusserkani R; Sadeghi M
    Biosystems; 2014 Oct; 124():86-94. PubMed ID: 25195150
    [TBL] [Abstract][Full Text] [Related]  

  • 18. On the rank-distance median of 3 permutations.
    Chindelevitch L; Pereira Zanetti JP; Meidanis J
    BMC Bioinformatics; 2018 May; 19(Suppl 6):142. PubMed ID: 29745865
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Computing the Rearrangement Distance of Natural Genomes.
    Bohnenkämper L; Braga MDV; Doerr D; Stoye J
    J Comput Biol; 2021 Apr; 28(4):410-431. PubMed ID: 33393848
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Optimal phylogenetic reconstruction of insertion and deletion events.
    Tule S; Foley G; Zhao C; Forbes M; Bodén M
    Bioinformatics; 2024 Jun; 40(Supplement_1):i277-i286. PubMed ID: 38940131
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.