BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

202 related articles for article (PubMed ID: 36812239)

  • 1. Long-read sequencing identifies novel structural variations in colorectal cancer.
    Xu L; Wang X; Lu X; Liang F; Liu Z; Zhang H; Li X; Tian S; Wang L; Wang Z
    PLoS Genet; 2023 Feb; 19(2):e1010514. PubMed ID: 36812239
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.
    Fujimoto A; Wong JH; Yoshii Y; Akiyama S; Tanaka A; Yagi H; Shigemizu D; Nakagawa H; Mizokami M; Shimada M
    Genome Med; 2021 Apr; 13(1):65. PubMed ID: 33910608
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection.
    Canaguier A; Guilbaud R; Denis E; Magdelenat G; Belser C; Istace B; Cruaud C; Wincker P; Le Paslier MC; Faivre-Rampant P; Barbe V
    BMC Genomics; 2022 Apr; 23(1):317. PubMed ID: 35448948
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers.
    Alaei-Mahabadi B; Bhadury J; Karlsson JW; Nilsson JA; Larsson E
    Proc Natl Acad Sci U S A; 2016 Nov; 113(48):13768-13773. PubMed ID: 27856756
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Identification of Structural Variation in Chimpanzees Using Optical Mapping and Nanopore Sequencing.
    Soto DC; Shew C; Mastoras M; Schmidt JM; Sahasrabudhe R; Kaya G; Andrés AM; Dennis MY
    Genes (Basel); 2020 Mar; 11(3):. PubMed ID: 32143403
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genome sequencing in cytogenetics: Comparison of short-read and linked-read approaches for germline structural variant detection and characterization.
    Uguen K; Jubin C; Duffourd Y; Bardel C; Malan V; Dupont JM; El Khattabi L; Chatron N; Vitobello A; Rollat-Farnier PA; Baulard C; Lelorch M; Leduc A; Tisserant E; Tran Mau-Them F; Danjean V; Delepine M; Till M; Meyer V; Lyonnet S; Mosca-Boidron AL; Thevenon J; Faivre L; Thauvin-Robinet C; Schluth-Bolard C; Boland A; Olaso R; Callier P; Romana S; Deleuze JF; Sanlaville D
    Mol Genet Genomic Med; 2020 Mar; 8(3):e1114. PubMed ID: 31985172
    [TBL] [Abstract][Full Text] [Related]  

  • 7. LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data.
    Fang L; Kao C; Gonzalez MV; Mafra FA; Pellegrino da Silva R; Li M; Wenzel SS; Wimmer K; Hakonarson H; Wang K
    Nat Commun; 2019 Dec; 10(1):5585. PubMed ID: 31811119
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies.
    Zhao X; Collins RL; Lee WP; Weber AM; Jun Y; Zhu Q; Weisburd B; Huang Y; Audano PA; Wang H; Walker M; Lowther C; Fu J; ; Gerstein MB; Devine SE; Marschall T; Korbel JO; Eichler EE; Chaisson MJP; Lee C; Mills RE; Brand H; Talkowski ME
    Am J Hum Genet; 2021 May; 108(5):919-928. PubMed ID: 33789087
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv.
    Shiraishi Y; Koya J; Chiba K; Okada A; Arai Y; Saito Y; Shibata T; Kataoka K
    Nucleic Acids Res; 2023 Aug; 51(14):e74. PubMed ID: 37336583
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Integrated paired-end enhancer profiling and whole-genome sequencing reveals recurrent
    Ooi WF; Nargund AM; Lim KJ; Zhang S; Xing M; Mandoli A; Lim JQ; Ho SWT; Guo Y; Yao X; Lin SJ; Nandi T; Xu C; Ong X; Lee M; Tan AL; Lam YN; Teo JX; Kaneda A; White KP; Lim WK; Rozen SG; Teh BT; Li S; Skanderup AJ; Tan P
    Gut; 2020 Jun; 69(6):1039-1052. PubMed ID: 31542774
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Initial Analysis of Structural Variation Detections in Cattle Using Long-Read Sequencing Methods.
    Gao Y; Ma L; Liu GE
    Genes (Basel); 2022 May; 13(5):. PubMed ID: 35627213
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Dynamic Interplay between Structural Variations and 3D Genome Organization in Pancreatic Cancer.
    Du Y; Gu Z; Li Z; Yuan Z; Zhao Y; Zheng X; Bo X; Chen H; Wang C
    Adv Sci (Weinh); 2022 Jun; 9(18):e2200818. PubMed ID: 35570408
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints.
    Zhang Y; Chen F; Creighton CJ
    BMC Bioinformatics; 2021 Mar; 22(1):135. PubMed ID: 33743584
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Detection of Structural Variations and Fusion Genes in Breast Cancer Samples Using Third-Generation Sequencing.
    Hu T; Li J; Long M; Wu J; Zhang Z; Xie F; Zhao J; Yang H; Song Q; Lian S; Shi J; Guo X; Yuan D; Lang D; Yu G; Liang B; Zhou X; Ishibashi T; Fan X; Yu W; Wang D; Wang Y; Peng IF; Wang S
    Front Cell Dev Biol; 2022; 10():854640. PubMed ID: 35493102
    [No Abstract]   [Full Text] [Related]  

  • 15. Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing.
    Kosugi S; Momozawa Y; Liu X; Terao C; Kubo M; Kamatani Y
    Genome Biol; 2019 Jun; 20(1):117. PubMed ID: 31159850
    [TBL] [Abstract][Full Text] [Related]  

  • 16. StrVCTVRE: A supervised learning method to predict the pathogenicity of human genome structural variants.
    Sharo AG; Hu Z; Sunyaev SR; Brenner SE
    Am J Hum Genet; 2022 Feb; 109(2):195-209. PubMed ID: 35032432
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Unravelling the tumour genome: The evolutionary and clinical impacts of structural variants in tumourigenesis.
    Hamdan A; Ewing A
    J Pathol; 2022 Jul; 257(4):479-493. PubMed ID: 35355264
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Long-Read Sequencing Improves the Detection of Structural Variations Impacting Complex Non-Coding Elements of the Genome.
    Begum G; Albanna A; Bankapur A; Nassir N; Tambi R; Berdiev BK; Akter H; Karuvantevida N; Kellam B; Alhashmi D; Sung WWL; Thiruvahindrapuram B; Alsheikh-Ali A; Scherer SW; Uddin M
    Int J Mol Sci; 2021 Feb; 22(4):. PubMed ID: 33669700
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data.
    Gu W; Zhou A; Wang L; Sun S; Cui X; Zhu D
    J Comput Biol; 2021 Aug; 28(8):774-788. PubMed ID: 33973820
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Toward the functional interpretation of somatic structural variations: bulk- and single-cell approaches.
    Yi D; Nam JW; Jeong H
    Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37587831
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.