210 related articles for article (PubMed ID: 36814836)
1. Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies.
Usyk M; Peters BA; Karthikeyan S; McDonald D; Sollecito CC; Vazquez-Baeza Y; Shaffer JP; Gellman MD; Talavera GA; Daviglus ML; Thyagarajan B; Knight R; Qi Q; Kaplan R; Burk RD
Cell Rep Methods; 2023 Jan; 3(1):100391. PubMed ID: 36814836
[TBL] [Abstract][Full Text] [Related]
2. Shallow shotgun sequencing of the microbiome recapitulates 16S amplicon results and provides functional insights.
Stothart MR; McLoughlin PD; Poissant J
Mol Ecol Resour; 2023 Apr; 23(3):549-564. PubMed ID: 36112078
[TBL] [Abstract][Full Text] [Related]
3. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
[TBL] [Abstract][Full Text] [Related]
4. Core of the saliva microbiome: an analysis of the MG-RAST data.
Oliveira SG; Nishiyama RR; Trigo CAC; Mattos-Guaraldi AL; Dávila AMR; Jardim R; Aguiar FHB
BMC Oral Health; 2021 Jul; 21(1):351. PubMed ID: 34271900
[TBL] [Abstract][Full Text] [Related]
5. Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
Brumfield KD; Huq A; Colwell RR; Olds JL; Leddy MB
PLoS One; 2020; 15(2):e0228899. PubMed ID: 32053657
[TBL] [Abstract][Full Text] [Related]
6. Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota.
Durazzi F; Sala C; Castellani G; Manfreda G; Remondini D; De Cesare A
Sci Rep; 2021 Feb; 11(1):3030. PubMed ID: 33542369
[TBL] [Abstract][Full Text] [Related]
7. Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing.
Ranjan R; Rani A; Metwally A; McGee HS; Perkins DL
Biochem Biophys Res Commun; 2016 Jan; 469(4):967-77. PubMed ID: 26718401
[TBL] [Abstract][Full Text] [Related]
8. Characterization and Demonstration of Mock Communities as Control Reagents for Accurate Human Microbiome Community Measurements.
Tourlousse DM; Narita K; Miura T; Ohashi A; Matsuda M; Ohyama Y; Shimamura M; Furukawa M; Kasahara K; Kameyama K; Saito S; Goto M; Shimizu R; Mishima R; Nakayama J; Hosomi K; Kunisawa J; Terauchi J; Sekiguchi Y; Kawasaki H
Microbiol Spectr; 2022 Apr; 10(2):e0191521. PubMed ID: 35234490
[TBL] [Abstract][Full Text] [Related]
9. Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.
Ziesemer KA; Mann AE; Sankaranarayanan K; Schroeder H; Ozga AT; Brandt BW; Zaura E; Waters-Rist A; Hoogland M; Salazar-García DC; Aldenderfer M; Speller C; Hendy J; Weston DA; MacDonald SJ; Thomas GH; Collins MJ; Lewis CM; Hofman C; Warinner C
Sci Rep; 2015 Nov; 5():16498. PubMed ID: 26563586
[TBL] [Abstract][Full Text] [Related]
10. Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing.
Tessler M; Neumann JS; Afshinnekoo E; Pineda M; Hersch R; Velho LFM; Segovia BT; Lansac-Toha FA; Lemke M; DeSalle R; Mason CE; Brugler MR
Sci Rep; 2017 Jul; 7(1):6589. PubMed ID: 28761145
[TBL] [Abstract][Full Text] [Related]
11. Combined bacterial and fungal targeted amplicon sequencing of respiratory samples: Does the DNA extraction method matter?
Angebault C; Payen M; Woerther PL; Rodriguez C; Botterel F
PLoS One; 2020; 15(4):e0232215. PubMed ID: 32343737
[TBL] [Abstract][Full Text] [Related]
12. Evaluating the Information Content of Shallow Shotgun Metagenomics.
Hillmann B; Al-Ghalith GA; Shields-Cutler RR; Zhu Q; Gohl DM; Beckman KB; Knight R; Knights D
mSystems; 2018; 3(6):. PubMed ID: 30443602
[TBL] [Abstract][Full Text] [Related]
13. Shallow shotgun sequencing reduces technical variation in microbiome analysis.
La Reau AJ; Strom NB; Filvaroff E; Mavrommatis K; Ward TL; Knights D
Sci Rep; 2023 May; 13(1):7668. PubMed ID: 37169816
[TBL] [Abstract][Full Text] [Related]
14. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
15. RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes.
Zhang Y; Ji P; Wang J; Zhao F
Nucleic Acids Res; 2016 Jun; 44(10):e99. PubMed ID: 26984526
[TBL] [Abstract][Full Text] [Related]
16. Detection of Microorganisms in Body Fluid Samples.
Ji X; Ni S; Tian G; Zhang L; Wang W
Methods Mol Biol; 2023; 2695():73-88. PubMed ID: 37450112
[TBL] [Abstract][Full Text] [Related]
17. Comprehensive Assessment of 16S rRNA Gene Amplicon Sequencing for Microbiome Profiling across Multiple Habitats.
Zhang W; Fan X; Shi H; Li J; Zhang M; Zhao J; Su X
Microbiol Spectr; 2023 Jun; 11(3):e0056323. PubMed ID: 37102867
[TBL] [Abstract][Full Text] [Related]
18. Host DNA depletion efficiency of microbiome DNA enrichment methods in infected tissue samples.
Heravi FS; Zakrzewski M; Vickery K; Hu H
J Microbiol Methods; 2020 Mar; 170():105856. PubMed ID: 32007505
[TBL] [Abstract][Full Text] [Related]
19. Comparison Between Full-Length 16S rRNA Metabarcoding and Whole Metagenome Sequencing Suggests the Use of Either Is Suitable for Large-Scale Microbiome Studies.
Rubiola S; Macori G; Civera T; Fanning S; Mitchell M; Chiesa F
Foodborne Pathog Dis; 2022 Jul; 19(7):495-504. PubMed ID: 35819265
[TBL] [Abstract][Full Text] [Related]
20. Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data.
Gehrig JL; Portik DM; Driscoll MD; Jackson E; Chakraborty S; Gratalo D; Ashby M; Valladares R
Microb Genom; 2022 Mar; 8(3):. PubMed ID: 35302439
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
