These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

214 related articles for article (PubMed ID: 36824332)

  • 1. SMARTdenovo: a
    Liu H; Wu S; Li A; Ruan J
    GigaByte; 2021; 2021():gigabyte15. PubMed ID: 36824332
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
    Cherukuri Y; Janga SC
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
    [TBL] [Abstract][Full Text] [Related]  

  • 3. B-assembler: a circular bacterial genome assembler.
    Huang F; Xiao L; Gao M; Vallely EJ; Dybvig K; Atkinson TP; Waites KB; Chong Z
    BMC Genomics; 2022 May; 23(Suppl 4):361. PubMed ID: 35546658
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Clover: a clustering-oriented de novo assembler for Illumina sequences.
    Hsieh MF; Lu CL; Tang CY
    BMC Bioinformatics; 2020 Nov; 21(1):528. PubMed ID: 33203354
    [TBL] [Abstract][Full Text] [Related]  

  • 5. LMAS: evaluating metagenomic short de novo assembly methods through defined communities.
    Mendes CI; Vila-Cerqueira P; Motro Y; Moran-Gilad J; Carriço JA; Ramirez M
    Gigascience; 2022 Dec; 12():. PubMed ID: 36576131
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Canu: scalable and accurate long-read assembly via adaptive
    Koren S; Walenz BP; Berlin K; Miller JR; Bergman NH; Phillippy AM
    Genome Res; 2017 May; 27(5):722-736. PubMed ID: 28298431
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Assembly of long error-prone reads using de Bruijn graphs.
    Lin Y; Yuan J; Kolmogorov M; Shen MW; Chaisson M; Pevzner PA
    Proc Natl Acad Sci U S A; 2016 Dec; 113(52):E8396-E8405. PubMed ID: 27956617
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Assembler for de novo assembly of large genomes.
    Chu TC; Lu CH; Liu T; Lee GC; Li WH; Shih AC
    Proc Natl Acad Sci U S A; 2013 Sep; 110(36):E3417-24. PubMed ID: 23966565
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies.
    Zhang W; Chen J; Yang Y; Tang Y; Shang J; Shen B
    PLoS One; 2011 Mar; 6(3):e17915. PubMed ID: 21423806
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Choice of assemblers has a critical impact on de novo assembly of SARS-CoV-2 genome and characterizing variants.
    Islam R; Raju RS; Tasnim N; Shihab IH; Bhuiyan MA; Araf Y; Islam T
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33822878
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PERGA: a paired-end read guided de novo assembler for extending contigs using SVM and look ahead approach.
    Zhu X; Leung HC; Chin FY; Yiu SM; Quan G; Liu B; Wang Y
    PLoS One; 2014; 9(12):e114253. PubMed ID: 25461763
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A Comprehensive Study of De Novo Genome Assemblers: Current Challenges and Future Prospective.
    Khan AR; Pervez MT; Babar ME; Naveed N; Shoaib M
    Evol Bioinform Online; 2018; 14():1176934318758650. PubMed ID: 29511353
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BASE: a practical de novo assembler for large genomes using long NGS reads.
    Liu B; Liu CM; Li D; Li Y; Ting HF; Yiu SM; Luo R; Lam TW
    BMC Genomics; 2016 Aug; 17 Suppl 5(Suppl 5):499. PubMed ID: 27586129
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparative Evaluation of Genome Assemblers from Long-Read Sequencing for Plants and Crops.
    Jung H; Jeon MS; Hodgett M; Waterhouse P; Eyun SI
    J Agric Food Chem; 2020 Jul; 68(29):7670-7677. PubMed ID: 32530283
    [TBL] [Abstract][Full Text] [Related]  

  • 15. LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data.
    Al Qaffas A; Nichols J; Davison AJ; Ourahmane A; Hertel L; McVoy MA; Camiolo S
    Virus Evol; 2021 Jan; 7(1):veab042. PubMed ID: 33996146
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools.
    Kisand V; Lettieri T
    BMC Genomics; 2013 Apr; 14():211. PubMed ID: 23547799
    [TBL] [Abstract][Full Text] [Related]  

  • 17. HISEA: HIerarchical SEed Aligner for PacBio data.
    Khiste N; Ilie L
    BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A practical assembly guideline for genomes with various levels of heterozygosity.
    Mochizuki T; Sakamoto M; Tanizawa Y; Nakayama T; Tanifuji G; Kamikawa R; Nakamura Y
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37798248
    [TBL] [Abstract][Full Text] [Related]  

  • 19. High-quality genome assembly of Huazhan and Tianfeng, the parents of an elite rice hybrid Tian-you-hua-zhan.
    Zhang H; Wang Y; Deng C; Zhao S; Zhang P; Feng J; Huang W; Kang S; Qian Q; Xiong G; Chang Y
    Sci China Life Sci; 2022 Feb; 65(2):398-411. PubMed ID: 34251582
    [TBL] [Abstract][Full Text] [Related]  

  • 20. TraRECo: a greedy approach based de novo transcriptome assembler with read error correction using consensus matrix.
    Yoon S; Kim D; Kang K; Park WJ
    BMC Genomics; 2018 Sep; 19(1):653. PubMed ID: 30180798
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.