These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

183 related articles for article (PubMed ID: 36828844)

  • 1. Evaluating native-like structures of RNA-protein complexes through the deep learning method.
    Zeng C; Jian Y; Vosoughi S; Zeng C; Zhao Y
    Nat Commun; 2023 Feb; 14(1):1060. PubMed ID: 36828844
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A nonredundant structure dataset for benchmarking protein-RNA computational docking.
    Huang SY; Zou X
    J Comput Chem; 2013 Feb; 34(4):311-8. PubMed ID: 23047523
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Sampling Native-like Structures of RNA-Protein Complexes through Rosetta Folding and Docking.
    Kappel K; Das R
    Structure; 2019 Jan; 27(1):140-151.e5. PubMed ID: 30416038
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Flexible protein-protein docking with a multitrack iterative transformer.
    Chu LS; Ruffolo JA; Harmalkar A; Gray JJ
    Protein Sci; 2024 Feb; 33(2):e4862. PubMed ID: 38148272
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants.
    Yin R; Feng BY; Varshney A; Pierce BG
    Protein Sci; 2022 Aug; 31(8):e4379. PubMed ID: 35900023
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Properties that rank protein:protein docking poses with high accuracy.
    Simões ICM; Coimbra JTS; Neves RPP; Costa IPD; Ramos MJ; Fernandes PA
    Phys Chem Chem Phys; 2018 Aug; 20(32):20927-20942. PubMed ID: 30067268
    [TBL] [Abstract][Full Text] [Related]  

  • 7. IFACEwat: the interfacial water-implemented re-ranking algorithm to improve the discrimination of near native structures for protein rigid docking.
    Su C; Nguyen TD; Zheng J; Kwoh CK
    BMC Bioinformatics; 2014; 15 Suppl 16(Suppl 16):S9. PubMed ID: 25521441
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein-RNA complexes and efficient automatic docking: expanding RosettaDock possibilities.
    Guilhot-Gaudeffroy A; Froidevaux C; Azé J; Bernauer J
    PLoS One; 2014; 9(9):e108928. PubMed ID: 25268579
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y; Douguet D; Tovchigrechko A; Vakser IA
    Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction.
    Yan C; Xu X; Zou X
    Structure; 2016 Oct; 24(10):1842-1853. PubMed ID: 27642160
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A protein-RNA docking benchmark (I): nonredundant cases.
    Barik A; C N; P M; Bahadur RP
    Proteins; 2012 Jul; 80(7):1866-71. PubMed ID: 22488669
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Simulated unbound structures for benchmarking of protein docking in the DOCKGROUND resource.
    Kirys T; Ruvinsky AM; Singla D; Tuzikov AV; Kundrotas PJ; Vakser IA
    BMC Bioinformatics; 2015 Jul; 16(1):243. PubMed ID: 26227548
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Scoring optimisation of unbound protein-protein docking including protein binding site predictions.
    Schneider S; Zacharias M
    J Mol Recognit; 2012 Jan; 25(1):15-23. PubMed ID: 22213447
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Flexible Backbone Assembly and Refinement of Symmetrical Homomeric Complexes.
    Roy Burman SS; Yovanno RA; Gray JJ
    Structure; 2019 Jun; 27(6):1041-1051.e8. PubMed ID: 31006588
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A non-redundant protein-RNA docking benchmark version 2.0.
    Nithin C; Mukherjee S; Bahadur RP
    Proteins; 2017 Feb; 85(2):256-267. PubMed ID: 27862282
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein-protein docking with multiple residue conformations and residue substitutions.
    Lorber DM; Udo MK; Shoichet BK
    Protein Sci; 2002 Jun; 11(6):1393-408. PubMed ID: 12021438
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein docking prediction using predicted protein-protein interface.
    Li B; Kihara D
    BMC Bioinformatics; 2012 Jan; 13():7. PubMed ID: 22233443
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improved Accuracy in RNA-Protein Rigid Body Docking by Incorporating Force Field for Molecular Dynamics Simulation into the Scoring Function.
    Iwakiri J; Hamada M; Asai K; Kameda T
    J Chem Theory Comput; 2016 Sep; 12(9):4688-97. PubMed ID: 27494732
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Boosted neural networks scoring functions for accurate ligand docking and ranking.
    Ashtawy HM; Mahapatra NR
    J Bioinform Comput Biol; 2018 Apr; 16(2):1850004. PubMed ID: 29495922
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Accurate refinement of docked protein complexes using evolutionary information and deep learning.
    Akbal-Delibas B; Farhoodi R; Pomplun M; Haspel N
    J Bioinform Comput Biol; 2016 Jun; 14(3):1642002. PubMed ID: 26846813
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.