These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
107 related articles for article (PubMed ID: 36853661)
1. Protocol for comparing gene-level selection on coding mutations between two groups of samples with Coselens. Iranzo J; Gruenhagen G; Calle-Espinosa J; Koonin EV STAR Protoc; 2023 Mar; 4(1):102117. PubMed ID: 36853661 [TBL] [Abstract][Full Text] [Related]
2. Pervasive conditional selection of driver mutations and modular epistasis networks in cancer. Iranzo J; Gruenhagen G; Calle-Espinosa J; Koonin EV Cell Rep; 2022 Aug; 40(8):111272. PubMed ID: 36001960 [TBL] [Abstract][Full Text] [Related]
3. Protocol for gene annotation, prediction, and validation of genomic gene expansion. Zhang Q; Zhang ZD STAR Protoc; 2022 Dec; 3(4):101692. PubMed ID: 36125934 [TBL] [Abstract][Full Text] [Related]
4. Protocol for generating customizable and reproducible plots of sequencing coverage data using the seqNdisplayR package. Lykke-Andersen S; Rouvière JO; Schmid M; Gockert M; Jensen TH STAR Protoc; 2024 Jun; 5(2):102960. PubMed ID: 38502686 [TBL] [Abstract][Full Text] [Related]
5. The evolutionary plasticity of chromosome metabolism allows adaptation to constitutive DNA replication stress. Fumasoni M; Murray AW Elife; 2020 Feb; 9():. PubMed ID: 32043971 [TBL] [Abstract][Full Text] [Related]
6. Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer. Robertson AG; Yau C; Carrot-Zhang J; Damrauer JS; Knijnenburg TA; Chambwe N; Hoadley KA; Kemal A; Zenklusen JC; Cherniack AD; Beroukhim R; Zhou W STAR Protoc; 2021 Jun; 2(2):100483. PubMed ID: 33982016 [TBL] [Abstract][Full Text] [Related]
7. Somatic variant detection from multi-sampled genomic sequencing data of tumor specimens using the ith.Variant pipeline. Maeser N; Khan A; Sun R STAR Protoc; 2023 Mar; 4(1):101927. PubMed ID: 36586123 [TBL] [Abstract][Full Text] [Related]
8. HSDecipher: A pipeline for comparative genomic analysis of highly similar duplicate genes in eukaryotic genomes. Zhang X; Hu Y; Cheng Z; Archibald JM STAR Protoc; 2023 Mar; 4(1):102014. PubMed ID: 36633953 [TBL] [Abstract][Full Text] [Related]
9. A genomics approach reveals insights into the importance of gene losses for mammalian adaptations. Sharma V; Hecker N; Roscito JG; Foerster L; Langer BE; Hiller M Nat Commun; 2018 Mar; 9(1):1215. PubMed ID: 29572503 [TBL] [Abstract][Full Text] [Related]
10. huva: A human variation analysis framework to predict gene perturbation from population-scale multi-omics data. Aschenbrenner AC; Bonaguro L STAR Protoc; 2023 Mar; 4(2):102193. PubMed ID: 36964906 [TBL] [Abstract][Full Text] [Related]
11. PhenoMapping: a protocol to map cellular phenotypes to metabolic bottlenecks, identify conditional essentiality, and curate metabolic models. Chiappino-Pepe A; Hatzimanikatis V STAR Protoc; 2021 Mar; 2(1):100280. PubMed ID: 33532729 [TBL] [Abstract][Full Text] [Related]
12. Phenotypic plasticity as a mechanism of cave colonization and adaptation. Bilandžija H; Hollifield B; Steck M; Meng G; Ng M; Koch AD; Gračan R; Ćetković H; Porter ML; Renner KJ; Jeffery W Elife; 2020 Apr; 9():. PubMed ID: 32314737 [TBL] [Abstract][Full Text] [Related]
13. SparseSignatures: An R package using LASSO-regularized non-negative matrix factorization to identify mutational signatures from human tumor samples. Mella L; Lal A; Angaroni F; Maspero D; Piazza R; Sidow A; Antoniotti M; Graudenzi A; Ramazzotti D STAR Protoc; 2022 Sep; 3(3):101513. PubMed ID: 35779264 [TBL] [Abstract][Full Text] [Related]
14. Measurement of selection coefficients from genomic samples of adapting populations by computer modeling. Likhachev IV; Rouzine IM STAR Protoc; 2023 Mar; 4(1):101821. PubMed ID: 36871222 [TBL] [Abstract][Full Text] [Related]
15. Integrating readout of somatic mutations in individual cells with single-cell transcriptional profiling. Liu S; Nguyen M; Hormoz S STAR Protoc; 2021 Sep; 2(3):100673. PubMed ID: 34337442 [TBL] [Abstract][Full Text] [Related]
16. Computational protocol for the identification of X-linked genes contributing to X chromosome upregulation from RNA-sequencing datasets. Yang Q; Lyu Q; Tian J; An L STAR Protoc; 2023 Dec; 4(4):102680. PubMed ID: 37897732 [TBL] [Abstract][Full Text] [Related]
17. TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets. Zhang X; Hu Y; Eme L; Maruyama S; Eveleigh RJM; Curtis BA; Sibbald SJ; Hopkins JF; Filloramo GV; van Wijk KJ; Archibald JM STAR Protoc; 2022 Mar; 3(1):101175. PubMed ID: 35243369 [TBL] [Abstract][Full Text] [Related]
18. Protocol to analyze population structure and migration history based on human genome variation data. Zhao Z; Wang Y; Zhang Z; Li SC STAR Protoc; 2023 Mar; 4(1):101928. PubMed ID: 36520631 [TBL] [Abstract][Full Text] [Related]
19. Using population-scale transcriptomic and genomic data to map 3' UTR alternative polyadenylation quantitative trait loci. Zou X; Ding R; Chen W; Wang G; Cheng S; Wang Q; Li W; Li L STAR Protoc; 2022 Sep; 3(3):101566. PubMed ID: 35874472 [TBL] [Abstract][Full Text] [Related]
20. End-to-end pipeline for differential analysis of pausing in ribosome profiling data. Flanagan K; Li W; Greenblatt EJ; Dao Duc K STAR Protoc; 2022 Sep; 3(3):101605. PubMed ID: 36035799 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]