These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

177 related articles for article (PubMed ID: 36859088)

  • 1. Conformational multiplicity of bacterial ferric binding protein revealed by small angle x-ray scattering and molecular dynamics calculations.
    Liu G; Ekmen E; Jalalypour F; Mertens HDT; Jeffries CM; Svergun D; Atilgan AR; Atilgan C; Sayers Z
    J Chem Phys; 2023 Feb; 158(8):085101. PubMed ID: 36859088
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Hybrid Methods for Modeling Protein Structures Using Molecular Dynamics Simulations and Small-Angle X-Ray Scattering Data.
    Ekimoto T; Ikeguchi M
    Adv Exp Med Biol; 2018; 1105():237-258. PubMed ID: 30617833
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular Dynamics Simulations Combined with Nuclear Magnetic Resonance and/or Small-Angle X-ray Scattering Data for Characterizing Intrinsically Disordered Protein Conformational Ensembles.
    Chan-Yao-Chong M; Durand D; Ha-Duong T
    J Chem Inf Model; 2019 May; 59(5):1743-1758. PubMed ID: 30840442
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Small angle X-ray scattering analysis of thermophilic cytochrome P450 CYP119 and the effects of the N-terminal histidine tag.
    Doğru EK; Sakallı T; Liu G; Sayers Z; Surmeli NB
    Int J Biol Macromol; 2024 Apr; 265(Pt 2):131026. PubMed ID: 38522710
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Extracting time series matching a small-angle X-ray scattering profile from trajectories of molecular dynamics simulations.
    Shimizu M; Okuda A; Morishima K; Inoue R; Sato N; Yunoki Y; Urade R; Sugiyama M
    Sci Rep; 2022 Jun; 12(1):9970. PubMed ID: 35705644
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Computational approaches for deciphering the equilibrium and kinetic properties of iron transport proteins.
    Abdizadeh H; Atilgan AR; Atilgan C; Dedeoglu B
    Metallomics; 2017 Nov; 9(11):1513-1533. PubMed ID: 28967944
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Combined Small-Angle X-ray and Neutron Scattering Restraints in Molecular Dynamics Simulations.
    Chen PC; Shevchuk R; Strnad FM; Lorenz C; Karge L; Gilles R; Stadler AM; Hennig J; Hub JS
    J Chem Theory Comput; 2019 Aug; 15(8):4687-4698. PubMed ID: 31251056
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Insights into dynamic changes in ADC-7 and P99 cephalosporinases using small angle x-ray scattering (SAXS).
    Kumar I; Sagar A; Dhiman K; Bethel CR; Hujer AM; Carifi J; Ashish ; Bonomo RA
    J Biomol Struct Dyn; 2024 Sep; 42(14):7541-7553. PubMed ID: 37578017
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Evaluating Anti-CD32b F(ab) Conformation Using Molecular Dynamics and Small-Angle X-Ray Scattering.
    Sutton EJ; Bradshaw RT; Orr CM; Frendéus B; Larsson G; Teige I; Cragg MS; Tews I; Essex JW
    Biophys J; 2018 Jul; 115(2):289-299. PubMed ID: 30021105
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structural interpretations of a flexible cold-active AMS8 lipase by combining small-angle X-ray scattering and molecular dynamics simulation (SAXS-MD).
    Yaacob N; Kamonsutthipaijit N; Soontaranon S; Leow TC; Rahman RNZRA; Ali MSM
    Int J Biol Macromol; 2022 Nov; 220():1095-1103. PubMed ID: 36029961
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Conformational and oligomeric states of SPOP from small-angle X-ray scattering and molecular dynamics simulations.
    Thomasen FE; Cuneo MJ; Mittag T; Lindorff-Larsen K
    Elife; 2023 Mar; 12():. PubMed ID: 36856266
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structural insights into the membrane receptor ShuA in DDM micelles and in a model of gram-negative bacteria outer membrane as seen by SAXS and MD simulations.
    Abel S; Marchi M; Solier J; Finet S; Brillet K; Bonneté F
    Biochim Biophys Acta Biomembr; 2021 Feb; 1863(2):183504. PubMed ID: 33157097
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.
    Larsen AH; Wang Y; Bottaro S; Grudinin S; Arleth L; Lindorff-Larsen K
    PLoS Comput Biol; 2020 Apr; 16(4):e1007870. PubMed ID: 32339173
    [TBL] [Abstract][Full Text] [Related]  

  • 14. X-ray Characterization of Conformational Changes of Human Apo- and Holo-Transferrin.
    Campos-Escamilla C; Siliqi D; Gonzalez-Ramirez LA; Lopez-Sanchez C; Gavira JA; Moreno A
    Int J Mol Sci; 2021 Dec; 22(24):. PubMed ID: 34948188
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Improving Coarse-Grained Protein Force Fields with Small-Angle X-ray Scattering Data.
    Latham AP; Zhang B
    J Phys Chem B; 2019 Feb; 123(5):1026-1034. PubMed ID: 30620594
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Characterizing Protein-Protein Interactions and Viscosity of a Monoclonal Antibody from Low to High Concentration Using Small-Angle X-ray Scattering and Molecular Dynamics Simulations.
    Chowdhury AA; Manohar N; Lanzaro A; Kimball WD; Witek MA; Woldeyes MA; Majumdar R; Qian KK; Xu S; Gillilan RE; Huang Q; Truskett TM; Johnston KP
    Mol Pharm; 2023 Nov; 20(11):5563-5578. PubMed ID: 37782765
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Effects of ionic strength on SAXS data for proteins revealed by molecular dynamics simulations.
    Oroguchi T; Ikeguchi M
    J Chem Phys; 2011 Jan; 134(2):025102. PubMed ID: 21241150
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Theoretical modeling of multiprotein complexes by iSPOT: Integration of small-angle X-ray scattering, hydroxyl radical footprinting, and computational docking.
    Huang W; Ravikumar KM; Parisien M; Yang S
    J Struct Biol; 2016 Dec; 196(3):340-349. PubMed ID: 27496803
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Determination of Protein Structural Ensembles by Hybrid-Resolution SAXS Restrained Molecular Dynamics.
    Paissoni C; Jussupow A; Camilloni C
    J Chem Theory Comput; 2020 Apr; 16(4):2825-2834. PubMed ID: 32119546
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Conformational dynamics of a multidomain protein by neutron scattering and computational analysis.
    Nakagawa H; Saio T; Nagao M; Inoue R; Sugiyama M; Ajito S; Tominaga T; Kawakita Y
    Biophys J; 2021 Aug; 120(16):3341-3354. PubMed ID: 34242590
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.