These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

220 related articles for article (PubMed ID: 36864729)

  • 1. RNAJP: enhanced RNA 3D structure predictions with non-canonical interactions and global topology sampling.
    Li J; Chen SJ
    Nucleic Acids Res; 2023 Apr; 51(7):3341-3356. PubMed ID: 36864729
    [TBL] [Abstract][Full Text] [Related]  

  • 2. IsRNA1:
    Zhang D; Li J; Chen SJ
    J Chem Theory Comput; 2021 Mar; 17(3):1842-1857. PubMed ID: 33560836
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure.
    Reinharz V; Major F; Waldispühl J
    Bioinformatics; 2012 Jun; 28(12):i207-14. PubMed ID: 22689763
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Analysis of four-way junctions in RNA structures.
    Laing C; Schlick T
    J Mol Biol; 2009 Jul; 390(3):547-59. PubMed ID: 19445952
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Modeling Noncanonical RNA Base Pairs by a Coarse-Grained IsRNA2 Model.
    Zhang D; Chen SJ; Zhou R
    J Phys Chem B; 2021 Nov; 125(43):11907-11915. PubMed ID: 34694128
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Tertiary motifs revealed in analyses of higher-order RNA junctions.
    Laing C; Jung S; Iqbal A; Schlick T
    J Mol Biol; 2009 Oct; 393(1):67-82. PubMed ID: 19660472
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Advancing RNA 3D structure prediction: Exploring hierarchical and hybrid approaches in CASP15.
    Li J; Zhang S; Chen SJ
    Proteins; 2023 Dec; 91(12):1779-1789. PubMed ID: 37615235
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Computational methods toward accurate RNA structure prediction using coarse-grained and all-atom models.
    Krokhotin A; Dokholyan NV
    Methods Enzymol; 2015; 553():65-89. PubMed ID: 25726461
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Coarse-grained prediction of RNA loop structures.
    Liu L; Chen SJ
    PLoS One; 2012; 7(11):e48460. PubMed ID: 23144887
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNA tertiary structure prediction in CASP15 by the GeneSilico group: Folding simulations based on statistical potentials and spatial restraints.
    Baulin EF; Mukherjee S; Moafinejad SN; Wirecki TK; Badepally NG; Jaryani F; Stefaniak F; Amiri Farsani M; Ray A; Rocha de Moura T; Bujnicki JM
    Proteins; 2023 Dec; 91(12):1800-1810. PubMed ID: 37622458
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Quantifying RNA structures and interactions with a unified reduced chain representation model.
    Wang F; Xia R; Su Y; Cai P; Xu X
    Int J Biol Macromol; 2023 Dec; 253(Pt 5):127181. PubMed ID: 37793523
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Simultaneous prediction of RNA secondary structure and helix coaxial stacking.
    Shareghi P; Wang Y; Malmberg R; Cai L
    BMC Genomics; 2012 Jun; 13 Suppl 3(Suppl 3):S7. PubMed ID: 22759616
    [TBL] [Abstract][Full Text] [Related]  

  • 13. VfoldLA: A web server for loop assembly-based prediction of putative 3D RNA structures.
    Xu X; Zhao C; Chen SJ
    J Struct Biol; 2019 Sep; 207(3):235-240. PubMed ID: 31173857
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A two-dimensional replica-exchange molecular dynamics method for simulating RNA folding using sparse experimental restraints.
    Ebrahimi P; Kaur S; Baronti L; Petzold K; Chen AA
    Methods; 2019 Jun; 162-163():96-107. PubMed ID: 31059830
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Helix capping in RNA structure.
    Lee JC; Gutell RR
    PLoS One; 2014; 9(4):e93664. PubMed ID: 24691270
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.
    Parlea LG; Sweeney BA; Hosseini-Asanjan M; Zirbel CL; Leontis NB
    Methods; 2016 Jul; 103():99-119. PubMed ID: 27125735
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Coarse-grained simulations of RNA and DNA duplexes.
    Cragnolini T; Derreumaux P; Pasquali S
    J Phys Chem B; 2013 Jul; 117(27):8047-60. PubMed ID: 23730911
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate prediction of RNA nucleotide interactions with backbone k-tree model.
    Ding L; Xue X; LaMarca S; Mohebbi M; Samad A; Malmberg RL; Cai L
    Bioinformatics; 2015 Aug; 31(16):2660-7. PubMed ID: 25886978
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The influence of the local sequence environment on RNA loop structures.
    Schudoma C; Larhlimi A; Walther D
    RNA; 2011 Jul; 17(7):1247-57. PubMed ID: 21628431
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Topological constraints of RNA pseudoknotted and loop-kissing motifs: applications to three-dimensional structure prediction.
    Xu X; Chen SJ
    Nucleic Acids Res; 2020 Jul; 48(12):6503-6512. PubMed ID: 32491164
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.